Sub-family  

Parent family
HOM000141
 
Keywords


Overview of gene family content



The gene family ORTHO005408 has 10 genes in 7 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 1, showing 10 records out of 10 total, starting on record 1, ending on 10

gene_id species description comment strand chr outlier
AA0016G01620 aan name=e_gw1.16.338.1;protein_id=29511;transcript_id=29511;transcript=eq;prot=eq;;fatm=RING/U-box domain-containing protein - scaffold_16 No
AT3G02340 ath RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G15820.1); Has 9104 Blast hits to 9081 proteins in 277 species: Archae - 2; Bacteria - 2; Metazoa - 2595; Fungi - 690; Plants - 4590; Viruses - 42; Other Eukaryotes - 1183 (source: NCBI BLink).;RING/U-box superfamily protein transcript=eq;prot=eq; + 3 No
AT3G19950 ath RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G55530.1); Has 11106 Blast hits to 11075 proteins in 297 species: Archae - 0; Bacteria - 6; Metazoa - 2940; Fungi - 1152; Plants - 5266; Viruses - 73; Other Eukaryotes - 1669 (source: NCBI BLink).;RING/U-box superfamily protein transcript=eq;prot=eq; + 3 No
AT5G15820 ath RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G02340.1); Has 8420 Blast hits to 8405 proteins in 260 species: Archae - 0; Bacteria - 6; Metazoa - 2461; Fungi - 626; Plants - 4186; Viruses - 29; Other Eukaryotes - 1112 (source: NCBI BLink).;RING/U-box superfamily protein transcript=eq;prot=eq; + 5 No
ES0070G00330 esi conserved unknown protein;;Subcellular localisation: other localisation; pid=Esi0070_0038; - scaffold_70 No
FC004G06390 fcy name=estExt_fgenesh2_pg.C_40637;protein_id=260563;transcript_id=260563;transcript=eq;prot=eq;;fatm=RING/U-box domain-containing protein + scaffold_4 No
OS06G01200 osa zinc finger, C3HC4 type domain containing protein, expressed transcript=eq;prot=eq; + 6 No
OS10G34590 osa zinc finger, C3HC4 type domain containing protein, expressed transcript=eq;prot=eq; - 10 No
PP00223G00710 ppa NULL name=estExt_fgenesh1_pg.C_2230077,pid=169900,prot=eq,tid=169900 + scaffold_223 No
PTI_23G01110 ptri name=estExt_fgenesh1_pg.C_chr_230112;protein_id=49638;transcript_id=49638;transcript=eq;prot=eq;;fatm=RING/U-box domain-containing protein + chr_23 No
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