Gene family  

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Overview of gene family content



The gene family HOM003262 has 16 genes in 12 species (2 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 1, showing 16 records out of 16 total, starting on record 1, ending on 16

gene_id species description comment strand chr outlier
AT1G18780 ath RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G29840.1); Has 8581 Blast hits to 8560 proteins in 267 species: Archae - 0; Bacteria - 0; Metazoa - 2597; Fungi - 649; Plants - 4074; Viruses - 26; Other Eukaryotes - 1235 (source: NCBI BLink).;RING/U-box superfamily protein transcript=eq;prot=eq; - 1 No
AT5G01960 ath RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G65040.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;RING/U-box superfamily protein transcript=eq;prot=eq; + 5 No
BPRRCC1105_09G00950 bprrcc1105 pid=Bathy09g00950;fatm=RING finger and transmembrane domain-containing protein 1 + chrom_09 No
BPRRCC1105_11G01350 bprrcc1105 pid=Bathy11g01410; + chrom_11 Yes
CR16G04430 cre name=pg.chromosome_16_#_308;pid=332358;prot=eq;tid=332365;transcript=eq;fatm=RING/U-box domain-containing protein + chromosome_16 No
ES0125G00320 esi conserved unknown protein;;Subcellular localisation: other localisation; pid=Esi0125_0077; + scaffold_125 No
MP17G01250 mpu name=EuGene.0000170134;pid=54288;prot=eq;tid=54288;transcript=eq;fatm=RING finger and transmembrane domain-containing protein 1 + scaffold_17 No
MRCC299_03G06950 mrcc299 name=EuGene.0300010723;pid=57295;prot=eq;tid=57295;transcript=eq;fatm=RING finger and transmembrane domain-containing protein 2 + Chr_03 No
OL17G01100 olu NULL name=fgenesh1_pg.C_Chr_17000076,pid=18700,prot=eq,tid=18700 + Chr_17 Yes
OL17G01110 olu NULL name=e_gwEuk.17.175.1,pid=41951,prot=eq,tid=41951;fatm=E3 ubiquitin ligase (ISS) + Chr_17 No
ORCC809_17G01110 orcc809 name=EuGene.1700010114;pid=96458;prot=eq;tid=96458;transcript=eq;fatm=E3 ubiquitin ligase (ISS) + chr_17 No
OS01G07390 osa zinc finger, C3HC4 type family protein, expressed transcript=eq;prot=eq; + 1 No
OS05G25180 osa zinc finger, C3HC4 type family protein, expressed transcript=eq;prot=eq; - 5 No
OT18G01180 ota E3 ubiquitin ligase (ISS); name=OT18G01180;protein_id=CAL58565.1;prot=eq;fatm=E3 ubiquitin ligase (ISS) + chrom18 No
PP00022G00760 ppa NULL name=e_gw1.22.273.1,pid=117817,prot=eq,tid=117817 + scaffold_22 No
VC0073G00150 vca name=fgenesh4_pg.C_scaffold_73000014;pid=98495;prot=eq;tid=98495;transcript=eq;fatm=RING finger and transmembrane domain-containing protein + scaffold_73 No
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