Gene family  

Sub-families
ORTHO006831 (8 genes in 4 species)
ORTHO013115 (4 genes in 2 species)
ORTHO013902 (4 genes in 2 species)
View all sub-families (9)
 
Keywords


Overview of gene family content




aan
Aureococcus anophagefferens (1 gene)
ath
Arabidopsis thaliana (21 genes)
bprrcc1105
Bathycoccus prasinos (1 gene)
cnc64a
Chlorella sp NC64A (1 gene)
cre
Chlamydomonas reinhardtii (4 genes)
cvu
Coccomyxa sp. C169 (3 genes)
esi
Ectocarpus siliculosus (4 genes)
fcy
Fragilariopsis cylindrus (5 genes)
mrcc299
Micromonas sp RCC299 (2 genes)
olu
Ostreococcus lucimarinus (1 gene)
orcc809
Ostreococcus sp RCC809 (1 gene)
osa
Oryza sativa (17 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (6 genes)
ptri
Phaeodactylum tricornutum (2 genes)
tps
Thalassiosira pseudonana (1 gene)
vca
Volvox carteri (1 gene)



The gene family HOM000286 has 72 genes in 17 species (6 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 4, showing 20 records out of 72 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AA0004G02410 aan name=estExt_Genewise1Plus.C_40410;protein_id=52667;transcript_id=52667;transcript=eq;prot=eq;;fatm=RING finger protein 38 isoform 2 - scaffold_4 No
AT1G17970 ath RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G73760.1); Has 8802 Blast hits to 8789 proteins in 273 species: Archae - 0; Bacteria - 0; Metazoa - 2364; Fungi - 695; Plants - 4341; Viruses - 10; Other Eukaryotes - 1392 (source: NCBI BLink).;RING/U-box superfamily protein transcript=eq;prot=eq; + 1 No
AT1G36950 ath RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT4G00070.1); Has 2602 Blast hits to 2598 proteins in 198 species: Archae - 0; Bacteria - 0; Metazoa - 830; Fungi - 147; Plants - 1268; Viruses - 2; Other Eukaryotes - 355 (source: NCBI BLink).;RING/U-box superfamily protein transcript=eq;prot=eq; - 1 No
AT1G45180 ath RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G42940.1); Has 9233 Blast hits to 9191 proteins in 302 species: Archae - 0; Bacteria - 44; Metazoa - 2582; Fungi - 701; Plants - 4328; Viruses - 54; Other Eukaryotes - 1524 (source: NCBI BLink).;RING/U-box superfamily protein transcript=eq;prot=eq; + 1 No
AT1G53190 ath RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G15070.2); Has 8436 Blast hits to 8420 proteins in 276 species: Archae - 0; Bacteria - 0; Metazoa - 2403; Fungi - 639; Plants - 3969; Viruses - 29; Other Eukaryotes - 1396 (source: NCBI BLink).;RING/U-box superfamily protein transcript=eq;prot=eq; + 1 No
AT1G73760 ath RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G17970.1); Has 8524 Blast hits to 8508 proteins in 269 species: Archae - 0; Bacteria - 6; Metazoa - 2401; Fungi - 632; Plants - 4276; Viruses - 14; Other Eukaryotes - 1195 (source: NCBI BLink).;RING/U-box superfamily protein transcript=eq;prot=eq; - 1 No
AT1G74620 ath RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G29840.1); Has 10007 Blast hits to 9980 proteins in 284 species: Archae - 0; Bacteria - 0; Metazoa - 2594; Fungi - 843; Plants - 5042; Viruses - 48; Other Eukaryotes - 1480 (source: NCBI BLink).;RING/U-box superfamily protein transcript=eq;prot=eq; + 1 No
AT2G15530 ath RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT4G34040.1).;RING/U-box superfamily protein transcript=eq;prot=eq; + 2 No
AT2G37150 ath RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT4G34040.1).;RING/U-box superfamily protein transcript=eq;prot=eq; - 2 No
AT3G15070 ath RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G53190.2); Has 7358 Blast hits to 7345 proteins in 274 species: Archae - 0; Bacteria - 4; Metazoa - 2154; Fungi - 590; Plants - 3295; Viruses - 49; Other Eukaryotes - 1266 (source: NCBI BLink).;RING/U-box superfamily protein transcript=eq;prot=eq; - 3 No
AT3G19910 ath RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G63530.2); Has 15086 Blast hits to 12507 proteins in 429 species: Archae - 8; Bacteria - 555; Metazoa - 4333; Fungi - 1497; Plants - 5032; Viruses - 175; Other Eukaryotes - 3486 (source: NCBI BLink).;RING/U-box superfamily protein transcript=eq;prot=eq; + 3 No
AT3G47180 ath RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G19910.1); Has 6899 Blast hits to 6791 proteins in 270 species: Archae - 0; Bacteria - 34; Metazoa - 1877; Fungi - 301; Plants - 3664; Viruses - 39; Other Eukaryotes - 984 (source: NCBI BLink).;RING/U-box superfamily protein transcript=eq;prot=eq; - 3 No
AT3G63530 ath Encodes a novel E3 ubiquitin ligase that acts as a central negative regulator of Arabidopsis floral organ size. Organ size is limited by restricting the period of proliferative growth, rather than the rate of growth and appears to act in a novel pathway, independent of ANT and JAG. Both mRNA and protein are expressed in all actively growing regions of the plant and the vasculature and the protein is rapidly turned over by proteasome-mediated degradation.;RING/U-box superfamily protein transcript=eq;prot=eq; - 3 No
AT4G00070 ath RING/U-box superfamily protein; BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G36950.1); Has 668 Blast hits to 668 proteins in 83 species: Archae - 0; Bacteria - 0; Metazoa - 32; Fungi - 45; Plants - 506; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).;RING/U-box superfamily protein transcript=eq;prot=eq; - 4 No
AT4G31450 ath RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G24870.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;RING/U-box superfamily protein transcript=eq;prot=eq; - 4 No
AT4G34040 ath RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G15530.3); Has 8873 Blast hits to 7809 proteins in 315 species: Archae - 0; Bacteria - 89; Metazoa - 2441; Fungi - 580; Plants - 3871; Viruses - 41; Other Eukaryotes - 1851 (source: NCBI BLink).;RING/U-box superfamily protein transcript=eq;prot=eq; - 4 No
AT5G07225 ath RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G52140.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).;RING/U-box superfamily protein transcript=eq;prot=eq; - 5 No
AT5G10650 ath RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G24870.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;RING/U-box superfamily protein transcript=eq;prot=eq; - 5 No
AT5G24870 ath RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G10650.2); Has 13925 Blast hits to 9892 proteins in 386 species: Archae - 2; Bacteria - 791; Metazoa - 3360; Fungi - 995; Plants - 4460; Viruses - 70; Other Eukaryotes - 4247 (source: NCBI BLink).;RING/U-box superfamily protein transcript=eq;prot=eq; - 5 No
AT5G42940 ath RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G45180.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;RING/U-box superfamily protein transcript=eq;prot=eq; - 5 No
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