Gene family  

Sub-families
ORTHO000475 (25 genes in 19 species)
ORTHO000779 (23 genes in 19 species)
ORTHO001992 (19 genes in 18 species)
View all sub-families (4)
 
Keywords


Overview of gene family content



The gene family HOM000184 has 89 genes in 19 species (5 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 5, showing 20 records out of 89 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AA0001G03210 aan name=estExt_Genewise1Plus.C_10546;protein_id=52007;transcript_id=52007;transcript=eq;prot=eq;;fatm=cullin-like protein1 (ISS) + scaffold_1 No
AA0002G06730 aan name=gw1.2.594.1;protein_id=8684;transcript_id=8684;transcript=eq;prot=eq;;fatm=similar to cullin 4A (predicted), isoform CRA + scaffold_2 No
AA0022G01040 aan name=estExt_fgenesh2_pm.C_220019;protein_id=70316;transcript_id=70316;transcript=eq;prot=eq;;fatm=CBR-CUL-3 protein - scaffold_22 No
AA0033G00170 aan name=estExt_Genewise1Plus.C_330055;protein_id=55161;transcript_id=55161;transcript=eq;prot=eq;;fatm=CBR-CUL-3 protein + scaffold_33 No
AA0033G00180 aan name=estExt_Genewise1Plus.C_330057;protein_id=55162;transcript_id=55162;transcript=eq;prot=eq;;fatm=The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin Ligase Complex + scaffold_33 No
AA0038G00380 aan name=estExt_Genewise1Plus.C_380055;protein_id=55274;transcript_id=55274;transcript=eq;prot=eq;;fatm=cullin-like protein1 (ISS) + scaffold_38 No
AA0078G00080 aan name=estExt_fgenesh2_pg.C_780007;protein_id=72785;transcript_id=72785;transcript=eq;prot=eq;;fatm=cullin-like protein1 (ISS) - scaffold_78 No
AT1G02980 ath encodes an Arabidopsis cullin;cullin 2 transcript=eq;prot=eq; + 1 No
AT1G26830 ath Cullin, putative, similar to Cullin homolog 3 (CUL-3) SP:Q13618, GI:3639052 from (Homo sapiens); contains Pfam profile PF00888: Cullin family. Interacts with other components of E3 ligase complex suggesting it functions in RUB-modification. Forms complexes with BTB domain proteins forming a novel class of E3-based ubiquitin protein-ligase complexes. Mutant is early flowering and has a reduced sensitivity to far-red light. cul3a/cul3b homozygous/heterozygous plants are embryo lethal.;cullin 3 transcript=eq;prot=eq; + 1 No
AT1G43140 ath Cullin family protein; FUNCTIONS IN: ubiquitin protein ligase binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: endomembrane system, cullin-RING ubiquitin ligase complex; EXPRESSED IN: root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Cullin homology (InterPro:IPR016158), Cullin protein, neddylation domain (InterPro:IPR019559), Cullin, N-terminal (InterPro:IPR001373), Cullin repeat-like-containing domain (InterPro:IPR016159); BEST Arabidopsis thaliana protein match is: cullin 2 (TAIR:AT1G02980.1); Has 2163 Blast hits to 2131 proteins in 224 species: Archae - 0; Bacteria - 0; Metazoa - 935; Fungi - 457; Plants - 383; Viruses - 0; Other Eukaryotes - 388 (source: NCBI BLink).;Cullin family protein transcript=eq;prot=eq; + 1 No
AT1G59790 ath Cullin family protein; FUNCTIONS IN: ubiquitin protein ligase binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cullin-RING ubiquitin ligase complex; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, LP.06 six leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cullin, N-terminal (InterPro:IPR001373), Cullin repeat-like-containing domain (InterPro:IPR016159); BEST Arabidopsis thaliana protein match is: cullin 1 (TAIR:AT4G02570.4); Has 1509 Blast hits to 1507 proteins in 220 species: Archae - 0; Bacteria - 0; Metazoa - 762; Fungi - 308; Plants - 286; Viruses - 0; Other Eukaryotes - 153 (source: NCBI BLink).;Cullin family protein transcript=eq;prot=eq; + 1 No
AT1G59800 ath Cullin family protein; FUNCTIONS IN: ubiquitin protein ligase binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cullin-RING ubiquitin ligase complex; CONTAINS InterPro DOMAIN/s: Cullin, N-terminal (InterPro:IPR001373), Cullin repeat-like-containing domain (InterPro:IPR016159); BEST Arabidopsis thaliana protein match is: Cullin family protein (TAIR:AT1G59790.1); Has 1434 Blast hits to 1434 proteins in 216 species: Archae - 0; Bacteria - 0; Metazoa - 729; Fungi - 306; Plants - 271; Viruses - 0; Other Eukaryotes - 128 (source: NCBI BLink).;Cullin family protein transcript=eq;prot=eq; + 1 No
AT1G69670 ath cullin, putative, contains similarity to Cullin homolog 3 (CUL-3) SP:Q13618, GI:3639052 from (Homo sapiens); contains Pfam profile PF00888: Cullin family. Interacts with members of AtBPM family and RBX1 suggesting it is part of an E3 ligase complex involved in RUB modification.;cullin 3B transcript=eq;prot=eq; - 1 No
AT3G46910 ath Cullin family protein; FUNCTIONS IN: ubiquitin protein ligase binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cullin-RING ubiquitin ligase complex; CONTAINS InterPro DOMAIN/s: Cullin, N-terminal (InterPro:IPR001373), Cullin repeat-like-containing domain (InterPro:IPR016159); BEST Arabidopsis thaliana protein match is: cullin4 (TAIR:AT5G46210.1); Has 524 Blast hits to 524 proteins in 117 species: Archae - 0; Bacteria - 0; Metazoa - 312; Fungi - 63; Plants - 121; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).;Cullin family protein transcript=eq;prot=eq; + 3 Yes
AT4G02570 ath Encodes a cullin that is a component of SCF ubiquitin ligase complexes involved in mediating responses to auxin and jasmonic acid. Homozygous auxin-resistant mutants arrest growth soon after germination, lacking a root and hypocotyl. Heterozygotes display a variety of phenotypes consistent with impaired auxin response.;cullin 1 transcript=eq;prot=eq; + 4 No
AT4G12100 ath Cullin family protein; FUNCTIONS IN: ubiquitin protein ligase binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cullin-RING ubiquitin ligase complex; CONTAINS InterPro DOMAIN/s: Cullin, N-terminal (InterPro:IPR001373), Cullin repeat-like-containing domain (InterPro:IPR016159); BEST Arabidopsis thaliana protein match is: cullin4 (TAIR:AT5G46210.1); Has 1267 Blast hits to 1267 proteins in 186 species: Archae - 0; Bacteria - 0; Metazoa - 680; Fungi - 268; Plants - 230; Viruses - 0; Other Eukaryotes - 89 (source: NCBI BLink).;Cullin family protein transcript=eq;prot=eq; - 4 No
AT5G46210 ath Arabidopsis CULLIN4 (CUL4) forms an E3 ubiquitin ligase with the CDD complex and a common catalytic subunit RBX1 in mediating light control of development. This CUL4-based E3 ligase is essential for the repression of photomorphogenesis. The partial loss of CUL4 function resulted in a constitutive photomorphogenic phenotype with respect to morphogenesis and light-regulated gene expression. CUL4 exhibits a synergistic genetic interaction with COP10 and DET1.;cullin4 transcript=eq;prot=eq; - 5 No
BPRRCC1105_09G02930 bprrcc1105 pid=Bathy09g02930;fatm=CBR-CUL-3 protein - chrom_09 No
BPRRCC1105_17G00280 bprrcc1105 pid=Bathy17g00280;fatm=cullin-like protein1 (ISS) + chrom_17 No
BPRRCC1105_18G01020 bprrcc1105 pid=Bathy18g01020;fatm=similar to cullin 4A (predicted), isoform CRA - chrom_18 No
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