Gene family  

Sub-families
ORTHO005408 (10 genes in 7 species)
ORTHO005962 (9 genes in 5 species)
ORTHO009221 (6 genes in 5 species)
View all sub-families (14)
 
Keywords


Overview of gene family content



The gene family HOM000141 has 109 genes in 15 species (6 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 6, showing 20 records out of 109 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AA0006G05410 aan name=gw1.6.984.1;protein_id=17903;transcript_id=17903;transcript=eq;prot=eq;;fatm=RING/U-box domain-containing protein + scaffold_6 No
AA0016G01620 aan name=e_gw1.16.338.1;protein_id=29511;transcript_id=29511;transcript=eq;prot=eq;;fatm=RING/U-box domain-containing protein - scaffold_16 No
AT1G18760 ath Zinc finger, C3HC4 type (RING finger) family protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Ubiquitin interacting motif (InterPro:IPR003903); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G13228.1); Has 8667 Blast hits to 8640 proteins in 280 species: Archae - 0; Bacteria - 0; Metazoa - 2366; Fungi - 656; Plants - 4333; Viruses - 89; Other Eukaryotes - 1223 (source: NCBI BLink).;Zinc finger, C3HC4 type (RING finger) family protein transcript=eq;prot=eq; - 1 No
AT1G18770 ath RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: Zinc finger, C3HC4 type (RING finger) family protein (TAIR:AT1G18760.1); Has 8585 Blast hits to 8561 proteins in 274 species: Archae - 0; Bacteria - 0; Metazoa - 2475; Fungi - 605; Plants - 4263; Viruses - 82; Other Eukaryotes - 1160 (source: NCBI BLink).;RING/U-box superfamily protein transcript=eq;prot=eq; - 1 No
AT1G21960 ath RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: Zinc finger, C3HC4 type (RING finger) family protein (TAIR:AT1G18760.1); Has 8070 Blast hits to 8054 proteins in 255 species: Archae - 0; Bacteria - 0; Metazoa - 2404; Fungi - 520; Plants - 4111; Viruses - 10; Other Eukaryotes - 1025 (source: NCBI BLink).;RING/U-box superfamily protein transcript=eq;prot=eq; + 1 No
AT1G26800 ath RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G14200.1); Has 9899 Blast hits to 9869 proteins in 270 species: Archae - 0; Bacteria - 0; Metazoa - 2681; Fungi - 828; Plants - 5098; Viruses - 14; Other Eukaryotes - 1278 (source: NCBI BLink).;RING/U-box superfamily protein transcript=eq;prot=eq; - 1 No
AT1G50350 ath BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G19950.1); Has 37 Blast hits to 37 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). transcript=eq;prot=eq; + 1 Yes
AT1G55530 ath RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G13430.3); Has 11045 Blast hits to 10950 proteins in 292 species: Archae - 0; Bacteria - 8; Metazoa - 3210; Fungi - 1082; Plants - 5106; Viruses - 41; Other Eukaryotes - 1598 (source: NCBI BLink).;RING/U-box superfamily protein transcript=eq;prot=eq; - 1 No
AT1G60360 ath RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G19950.1); Has 9982 Blast hits to 9957 proteins in 273 species: Archae - 0; Bacteria - 6; Metazoa - 2754; Fungi - 1005; Plants - 4741; Viruses - 16; Other Eukaryotes - 1460 (source: NCBI BLink).;RING/U-box superfamily protein transcript=eq;prot=eq; - 1 No
AT1G68180 ath RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G56580.3); Has 9058 Blast hits to 9033 proteins in 265 species: Archae - 0; Bacteria - 0; Metazoa - 2534; Fungi - 573; Plants - 4692; Viruses - 31; Other Eukaryotes - 1228 (source: NCBI BLink).;RING/U-box superfamily protein transcript=eq;prot=eq; + 1 No
AT2G03000 ath RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G14200.1); Has 30893 Blast hits to 17053 proteins in 804 species: Archae - 45; Bacteria - 3195; Metazoa - 9909; Fungi - 5711; Plants - 4804; Viruses - 543; Other Eukaryotes - 6686 (source: NCBI BLink).;RING/U-box superfamily protein transcript=eq;prot=eq; + 2 No
AT2G15580 ath RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: Zinc finger, C3HC4 type (RING finger) family protein (TAIR:AT1G68070.1); Has 8108 Blast hits to 8088 proteins in 256 species: Archae - 0; Bacteria - 2; Metazoa - 2204; Fungi - 504; Plants - 4280; Viruses - 5; Other Eukaryotes - 1113 (source: NCBI BLink).;RING/U-box superfamily protein transcript=eq;prot=eq; + 2 No
AT2G29840 ath RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G18780.1); Has 8183 Blast hits to 8167 proteins in 259 species: Archae - 0; Bacteria - 0; Metazoa - 2399; Fungi - 572; Plants - 3959; Viruses - 34; Other Eukaryotes - 1219 (source: NCBI BLink).;RING/U-box superfamily protein transcript=eq;prot=eq; - 2 No
AT2G39720 ath Encodes a putative RING-H2 finger protein RHC2a.;RING-H2 finger C2A transcript=eq;prot=eq; - 2 No
AT2G40830 ath Encodes a putative RING-H2 finger protein RHC1a.;RING-H2 finger C1A transcript=eq;prot=eq; + 2 No
AT2G44330 ath RING/U-box superfamily protein; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G60080.1); Has 9788 Blast hits to 9762 proteins in 267 species: Archae - 0; Bacteria - 0; Metazoa - 2640; Fungi - 885; Plants - 4936; Viruses - 11; Other Eukaryotes - 1316 (source: NCBI BLink).;RING/U-box superfamily protein transcript=eq;prot=eq; + 2 No
AT3G02340 ath RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G15820.1); Has 9104 Blast hits to 9081 proteins in 277 species: Archae - 2; Bacteria - 2; Metazoa - 2595; Fungi - 690; Plants - 4590; Viruses - 42; Other Eukaryotes - 1183 (source: NCBI BLink).;RING/U-box superfamily protein transcript=eq;prot=eq; + 3 No
AT3G10815 ath RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING-H2 finger C1A (TAIR:AT2G40830.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).;RING/U-box superfamily protein transcript=eq;prot=eq; - 3 No
AT3G13228 ath RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: Zinc finger, C3HC4 type (RING finger) family protein (TAIR:AT1G18760.1); Has 5838 Blast hits to 5825 proteins in 235 species: Archae - 0; Bacteria - 0; Metazoa - 1731; Fungi - 340; Plants - 2980; Viruses - 20; Other Eukaryotes - 767 (source: NCBI BLink).;RING/U-box superfamily protein transcript=eq;prot=eq; + 3 No
AT3G13430 ath RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G55530.1); Has 9891 Blast hits to 9858 proteins in 281 species: Archae - 0; Bacteria - 11; Metazoa - 2611; Fungi - 953; Plants - 4922; Viruses - 39; Other Eukaryotes - 1355 (source: NCBI BLink).;RING/U-box superfamily protein transcript=eq;prot=eq; + 3 No
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