Gene family  

Sub-families
ORTHO002258 (18 genes in 8 species)
ORTHO003074 (16 genes in 3 species)
ORTHO004175 (13 genes in 5 species)
View all sub-families (62)
 
Keywords


Overview of gene family content




aan
Aureococcus anophagefferens (2 genes)
ath
Arabidopsis thaliana (135 genes)
bprrcc1105
Bathycoccus prasinos (4 genes)
cme
Cyanidioschyzon merolae (5 genes)
cnc64a
Chlorella sp NC64A (5 genes)
cre
Chlamydomonas reinhardtii (3 genes)
cvu
Coccomyxa sp. C169 (4 genes)
esi
Ectocarpus siliculosus (21 genes)
fcy
Fragilariopsis cylindrus (9 genes)
mpu
Micromonas pusilla strain CCMP1545 (6 genes)
mrcc299
Micromonas sp RCC299 (7 genes)
olu
Ostreococcus lucimarinus (5 genes)
orcc809
Ostreococcus sp RCC809 (5 genes)
osa
Oryza sativa (181 genes)
ota
Ostreococcus tauri (6 genes)
ppa
Physcomitrella patens (38 genes)
ptri
Phaeodactylum tricornutum (6 genes)
tps
Thalassiosira pseudonana (7 genes)
vca
Volvox carteri (5 genes)



The gene family HOM000019 has 454 genes in 19 species (36 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.




Index of genes with 1 constraints:

Page 1 of 23, showing 20 records out of 454 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AA0005G01700 aan name=estExt_Genewise1.C_50311;protein_id=36689;transcript_id=36689;transcript=eq;prot=eq;;fatm=RING/U-box domain-containing protein + scaffold_5 No
AA0006G03870 aan name=fgenesh2_pg.C_scaffold_6000286;protein_id=63178;transcript_id=63178;transcript=eq;prot=eq;;fatm=family protein-like - scaffold_6 No
AT1G04360 ath RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G43420.1); Has 9268 Blast hits to 9239 proteins in 300 species: Archae - 0; Bacteria - 0; Metazoa - 2276; Fungi - 656; Plants - 4907; Viruses - 85; Other Eukaryotes - 1344 (source: NCBI BLink).;RING/U-box superfamily protein transcript=eq;prot=eq; - 1 No
AT1G04790 ath RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G55530.1); Has 9425 Blast hits to 9403 proteins in 278 species: Archae - 0; Bacteria - 0; Metazoa - 2591; Fungi - 765; Plants - 4746; Viruses - 72; Other Eukaryotes - 1251 (source: NCBI BLink).;RING/U-box superfamily protein transcript=eq;prot=eq; + 1 No
AT1G12760 ath Zinc finger, C3HC4 type (RING finger) family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, zinc ion binding; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: Zinc finger, C3HC4 type (RING finger) family protein (TAIR:AT1G63170.1); Has 9873 Blast hits to 9851 proteins in 276 species: Archae - 0; Bacteria - 6; Metazoa - 2638; Fungi - 764; Plants - 5094; Viruses - 23; Other Eukaryotes - 1348 (source: NCBI BLink).;Zinc finger, C3HC4 type (RING finger) family protein transcript=eq;prot=eq; + 1 No
AT1G14200 ath RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G26800.1); Has 10250 Blast hits to 10222 proteins in 289 species: Archae - 0; Bacteria - 6; Metazoa - 2721; Fungi - 824; Plants - 5163; Viruses - 73; Other Eukaryotes - 1463 (source: NCBI BLink).;RING/U-box superfamily protein transcript=eq;prot=eq; - 1 No
AT1G15100 ath Encodes a putative RING-H2 finger protein RHA2a.;RING-H2 finger A2A transcript=eq;prot=eq; - 1 No
AT1G20823 ath RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to chitin; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G76410.1); Has 9063 Blast hits to 9039 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 2341; Fungi - 637; Plants - 4964; Viruses - 26; Other Eukaryotes - 1095 (source: NCBI BLink).;RING/U-box superfamily protein transcript=eq;prot=eq; + 1 No
AT1G22500 ath RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: stem, cotyledon, root, leaf; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G72200.1); Has 9627 Blast hits to 9604 proteins in 288 species: Archae - 0; Bacteria - 2; Metazoa - 2532; Fungi - 813; Plants - 4919; Viruses - 76; Other Eukaryotes - 1285 (source: NCBI BLink).;RING/U-box superfamily protein transcript=eq;prot=eq; + 1 No
AT1G23980 ath RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G40250.1); Has 9283 Blast hits to 9263 proteins in 297 species: Archae - 0; Bacteria - 6; Metazoa - 2141; Fungi - 689; Plants - 5036; Viruses - 72; Other Eukaryotes - 1339 (source: NCBI BLink).;RING/U-box superfamily protein transcript=eq;prot=eq; - 1 No
AT1G24580 ath RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G67856.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).;RING/U-box superfamily protein transcript=eq;prot=eq; + 1 Yes
AT1G28040 ath RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G46494.1); Has 8456 Blast hits to 8431 proteins in 273 species: Archae - 0; Bacteria - 0; Metazoa - 1947; Fungi - 512; Plants - 4886; Viruses - 19; Other Eukaryotes - 1092 (source: NCBI BLink).;RING/U-box superfamily protein transcript=eq;prot=eq; - 1 No
AT1G32361 ath Putative RING-H2 finger protein ATL1F precursor.;RING/U-box superfamily protein transcript=eq;prot=eq; + 1 No
AT1G33480 ath RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT4G10150.1); Has 8909 Blast hits to 8880 proteins in 293 species: Archae - 0; Bacteria - 9; Metazoa - 2258; Fungi - 649; Plants - 4733; Viruses - 65; Other Eukaryotes - 1195 (source: NCBI BLink).;RING/U-box superfamily protein transcript=eq;prot=eq; - 1 No
AT1G35330 ath RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT4G09120.1); Has 10408 Blast hits to 10377 proteins in 292 species: Archae - 0; Bacteria - 6; Metazoa - 2682; Fungi - 924; Plants - 5266; Viruses - 48; Other Eukaryotes - 1482 (source: NCBI BLink).;RING/U-box superfamily protein transcript=eq;prot=eq; + 1 No
AT1G35625 ath RING/U-box superfamily protein; FUNCTIONS IN: peptidase activity, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: Protease-associated (PA) RING/U-box zinc finger family protein (TAIR:AT1G35630.1); Has 8074 Blast hits to 8052 proteins in 237 species: Archae - 0; Bacteria - 0; Metazoa - 2068; Fungi - 599; Plants - 4611; Viruses - 2; Other Eukaryotes - 794 (source: NCBI BLink).;RING/U-box superfamily protein transcript=eq;prot=eq; - 1 No
AT1G49200 ath RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G49220.1); Has 8744 Blast hits to 8720 proteins in 274 species: Archae - 0; Bacteria - 0; Metazoa - 2273; Fungi - 539; Plants - 4805; Viruses - 46; Other Eukaryotes - 1081 (source: NCBI BLink).;RING/U-box superfamily protein transcript=eq;prot=eq; + 1 No
AT1G49210 ath RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.10 ten leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G49200.1); Has 8754 Blast hits to 8731 proteins in 271 species: Archae - 0; Bacteria - 0; Metazoa - 2313; Fungi - 505; Plants - 4805; Viruses - 45; Other Eukaryotes - 1086 (source: NCBI BLink).;RING/U-box superfamily protein transcript=eq;prot=eq; + 1 No
AT1G49220 ath RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G49200.1); Has 8983 Blast hits to 8960 proteins in 282 species: Archae - 0; Bacteria - 0; Metazoa - 2327; Fungi - 545; Plants - 4884; Viruses - 52; Other Eukaryotes - 1175 (source: NCBI BLink).;RING/U-box superfamily protein transcript=eq;prot=eq; + 1 No
AT1G49230 ath RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G49200.1); Has 9168 Blast hits to 9144 proteins in 279 species: Archae - 0; Bacteria - 0; Metazoa - 2452; Fungi - 610; Plants - 4926; Viruses - 41; Other Eukaryotes - 1139 (source: NCBI BLink).;RING/U-box superfamily protein transcript=eq;prot=eq; + 1 No
<< previous
1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 next >>

Download genes

Include following columns
gene_id
species
description
comment
strand
chr
outlier