Gene family expansion analysis 
Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.
- Gene family
- HOM005500
- Gene count gene family
- 9
- Total coding gene count
- 274,537
- Keywords
-
Organisms
| Organism | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
|---|---|---|---|---|---|
| Ostreococcus lucimarinus | 7,805 | 1 | 2.84% | 11.11% | 3.91 |
| Ostreococcus sp RCC809 | 7,492 | 1 | 2.73% | 11.11% | 4.07 |
| Ostreococcus tauri | 7,951 | 1 | 2.9% | 11.11% | 3.83 |
| Bathycoccus prasinos | 7,884 | 1 | 2.87% | 11.11% | 3.87 |
| Micromonas pusilla strain CCMP1545 | 10,574 | 1 | 3.85% | 11.11% | 2.89 |
| Micromonas sp RCC299 | 10,165 | 1 | 3.7% | 11.11% | 3 |
| Coccomyxa sp. C169 | 9,994 | 0 | 3.64% | 0% | 0 |
| Chlorella sp NC64A | 9,791 | 1 | 3.57% | 11.11% | 3.11 |
| Volvox carteri | 15,544 | 1 | 5.66% | 11.11% | 1.96 |
| Chlamydomonas reinhardtii | 16,706 | 1 | 6.09% | 11.11% | 1.82 |
| Arabidopsis thaliana | 27,416 | 0 | 9.99% | 0% | 0 |
| Oryza sativa | 42,211 | 0 | 15.38% | 0% | 0 |
| Physcomitrella patens | 28,097 | 0 | 10.23% | 0% | 0 |
| Cyanidioschyzon merolae | 5,014 | 0 | 1.83% | 0% | 0 |
| Phaeodactylum tricornutum | 10,192 | 0 | 3.71% | 0% | 0 |
| Fragilariopsis cylindrus | 18,074 | 0 | 6.58% | 0% | 0 |
| Thalassiosira pseudonana | 11,566 | 0 | 4.21% | 0% | 0 |
| Ectocarpus siliculosus | 16,455 | 0 | 5.99% | 0% | 0 |
| Aureococcus anophagefferens | 11,606 | 0 | 4.23% | 0% | 0 |
Phylogenetic clades
| Clade | Num species | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
|---|---|---|---|---|---|---|
| Ostreococcus | 3 | 23,248 | 3 | 8.47% | 33.33% | 3.94 |
| Micromonas | 2 | 20,739 | 2 | 7.55% | 22.22% | 2.94 |
| Mamiellales | 6 | 51,871 | 6 | 18.89% | 66.67% | 3.53 |
| Trebouxiophyceae | 2 | 19,785 | 1 | 7.21% | 11.11% | 1.54 |
| Chlamydomonadales | 2 | 32,250 | 2 | 11.75% | 22.22% | 1.89 |
| Chlorophyta | 10 | 103,906 | 9 | 37.85% | 100% | 2.64 |
| Magnoliophyta | 2 | 69,627 | 0 | 25.36% | 0% | 0 |
| Embryophyta | 3 | 97,724 | 0 | 35.6% | 0% | 0 |
| GreenPlants | 13 | 201,630 | 9 | 73.44% | 100% | 1.36 |
| Bacillariophyta | 3 | 39,832 | 0 | 14.51% | 0% | 0 |
| Stramenopiles | 5 | 67,893 | 0 | 24.73% | 0% | 0 |
| Eukaryotes | 19 | 274,537 | 9 | 100% | 100% | 1 |