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Documents and presentations

File Description
PLAZA_PGE_poster.pptxPoster for PLAZA 2.5
PLAZA_flyer_2.5.pdfFlyer presenting the capabilities of the PLAZA 2.5 platform.
PLAZA_flyer_3.0.pdfFlyer presenting the capabilities of the PLAZA 3.0 platform.
PLAZA_presentation.pptPresentation on the standard capabilities of PLAZA, including several frequently asked questions on topics concerning wetlab research. Presented at PSB Weekly Science Meeting 2010-01-22.

Annotation

Species Annotation GO Annotation Interpro
Arabidopsis thaliana annotation.ath.csv.gz (18.70 MB) go.ath.csv.gz (666.12 KB) interpro.ath.csv.gz (2.07 MB)
Bathycoccus prasinos annotation.bprrcc1105.csv.gz (4.07 MB) go.bprrcc1105.csv.gz (86.00 KB) interpro.bprrcc1105.csv.gz (501.93 KB)
Chlorella sp NC64A annotation.cnc64a.csv.gz (5.04 MB) go.cnc64a.csv.gz (109.45 KB) interpro.cnc64a.csv.gz (608.96 KB)
Chlamydomonas reinhardtii annotation.cre.csv.gz (8.96 MB) go.cre.csv.gz (121.58 KB) interpro.cre.csv.gz (759.61 KB)
Coccomyxa sp. C169 annotation.cvu.csv.gz (4.84 MB) go.cvu.csv.gz (98.20 KB) interpro.cvu.csv.gz (570.87 KB)
Micromonas pusilla strain CCMP1545 annotation.mpu.csv.gz (4.72 MB) go.mpu.csv.gz (91.83 KB) interpro.mpu.csv.gz (653.78 KB)
Micromonas sp RCC299 annotation.mrcc299.csv.gz (4.94 MB) go.mrcc299.csv.gz (103.27 KB) interpro.mrcc299.csv.gz (701.21 KB)
Ostreococcus lucimarinus annotation.olu.csv.gz (3.23 MB) go.olu.csv.gz (80.92 KB) interpro.olu.csv.gz (530.80 KB)
Ostreococcus sp RCC809 annotation.orcc809.csv.gz (3.29 MB) go.orcc809.csv.gz (81.58 KB) interpro.orcc809.csv.gz (468.91 KB)
Oryza sativa annotation.osa.csv.gz (26.63 MB) go.osa.csv.gz (439.78 KB) interpro.osa.csv.gz (2.26 MB)
Ostreococcus tauri annotation.ota.csv.gz (3.55 MB) go.ota.csv.gz (72.26 KB) interpro.ota.csv.gz (496.19 KB)
Physcomitrella patens annotation.ppa.csv.gz (14.17 MB) go.ppa.csv.gz (402.05 KB) interpro.ppa.csv.gz (1.58 MB)
Volvox carteri annotation.vca.csv.gz (9.34 MB) go.vca.csv.gz (120.97 KB) interpro.vca.csv.gz (699.77 KB)
Aureococcus anophagefferens annotation.aan.csv.gz (5.84 MB) go.aan.csv.gz (128.65 KB) interpro.aan.csv.gz (780.86 KB)
Ectocarpus siliculosus annotation.esi.csv.gz (9.37 MB) go.esi.csv.gz (134.96 KB) interpro.esi.csv.gz (951.13 KB)
Thalassiosira pseudonana annotation.tps.csv.gz (5.92 MB) go.tps.csv.gz (153.16 KB) interpro.tps.csv.gz (598.99 KB)
Fragilariopsis cylindrus annotation.fcy.csv.gz (7.81 MB) go.fcy.csv.gz (206.77 KB) interpro.fcy.csv.gz (638.38 KB)
Phaeodactylum tricornutum annotation.ptri.csv.gz (4.90 MB) go.ptri.csv.gz (136.52 KB) interpro.ptri.csv.gz (563.34 KB)
Cyanidioschyzon merolae annotation.cme.csv.gz (2.56 MB) go.cme.csv.gz (57.30 KB) interpro.cme.csv.gz (319.51 KB)
All species Not Available go.csv.gz (3.26 MB) interpro.csv.gz (15.65 MB)

Fasta data

Species CDS files Protein files
Arabidopsis thaliana cds.ath.tfa.gz (12.62 MB) proteome.ath.tfa.gz (6.40 MB)
Bathycoccus prasinos cds.bprrcc1105.tfa.gz (3.46 MB) proteome.bprrcc1105.tfa.gz (2.33 MB)
Chlorella sp NC64A cds.cnc64a.tfa.gz (3.62 MB) proteome.cnc64a.tfa.gz (2.47 MB)
Chlamydomonas reinhardtii cds.cre.tfa.gz (6.71 MB) proteome.cre.tfa.gz (4.50 MB)
Coccomyxa sp. C169 cds.cvu.tfa.gz (3.38 MB) proteome.cvu.tfa.gz (2.28 MB)
Micromonas pusilla strain CCMP1545 cds.mpu.tfa.gz (3.81 MB) proteome.mpu.tfa.gz (2.61 MB)
Micromonas sp RCC299 cds.mrcc299.tfa.gz (4.07 MB) proteome.mrcc299.tfa.gz (2.68 MB)
Ostreococcus lucimarinus cds.olu.tfa.gz (2.64 MB) proteome.olu.tfa.gz (1.78 MB)
Ostreococcus sp RCC809 cds.orcc809.tfa.gz (2.66 MB) proteome.orcc809.tfa.gz (1.80 MB)
Oryza sativa cds.osa.tfa.gz (21.79 MB) proteome.osa.tfa.gz (8.24 MB)
Ostreococcus tauri cds.ota.tfa.gz (2.86 MB) proteome.ota.tfa.gz (1.92 MB)
Physcomitrella patens cds.ppa.tfa.gz (11.10 MB) proteome.ppa.tfa.gz (6.09 MB)
Volvox carteri cds.vca.tfa.gz (7.19 MB) proteome.vca.tfa.gz (4.74 MB)
Aureococcus anophagefferens cds.aan.tfa.gz (4.77 MB) proteome.aan.tfa.gz (3.28 MB)
Ectocarpus siliculosus cds.esi.tfa.gz (7.15 MB) proteome.esi.tfa.gz (4.75 MB)
Thalassiosira pseudonana cds.tps.tfa.gz (4.84 MB) proteome.tps.tfa.gz (3.12 MB)
Fragilariopsis cylindrus cds.fcy.tfa.gz (6.28 MB) proteome.fcy.tfa.gz (4.22 MB)
Phaeodactylum tricornutum cds.ptri.tfa.gz (3.98 MB) proteome.ptri.tfa.gz (2.66 MB)
Cyanidioschyzon merolae cds.cme.tfa.gz (2.18 MB) proteome.cme.tfa.gz (1.41 MB)
All species Not Available Not Available

Intra-species block duplicates

Species Anchorpoints
Arabidopsis thaliana anchorpoints.ath.csv.gz (106.39 KB)
Bathycoccus prasinos anchorpoints.bprrcc1105.csv.gz (87.00 B)
Chlorella sp NC64A anchorpoints.cnc64a.csv.gz (83.00 B)
Chlamydomonas reinhardtii anchorpoints.cre.csv.gz (41.83 KB)
Coccomyxa sp. C169 anchorpoints.cvu.csv.gz (655.00 B)
Micromonas pusilla strain CCMP1545 anchorpoints.mpu.csv.gz (86.96 KB)
Micromonas sp RCC299 anchorpoints.mrcc299.csv.gz (84.00 B)
Ostreococcus lucimarinus anchorpoints.olu.csv.gz (145.06 KB)
Ostreococcus sp RCC809 anchorpoints.orcc809.csv.gz (673.00 B)
Oryza sativa anchorpoints.osa.csv.gz (104.34 KB)
Ostreococcus tauri anchorpoints.ota.csv.gz (131.87 KB)
Physcomitrella patens anchorpoints.ppa.csv.gz (12.21 KB)
Volvox carteri anchorpoints.vca.csv.gz (41.98 KB)
Aureococcus anophagefferens anchorpoints.aan.csv.gz (1.73 KB)
Ectocarpus siliculosus anchorpoints.esi.csv.gz (314.00 B)
Thalassiosira pseudonana anchorpoints.tps.csv.gz (457.00 B)
Fragilariopsis cylindrus anchorpoints.fcy.csv.gz (3.22 KB)
Phaeodactylum tricornutum anchorpoints.ptri.csv.gz (715.00 B)
Cyanidioschyzon merolae anchorpoints.cme.csv.gz (272.00 B)
All species anchorpoints.csv.gz (432.81 KB)

Gene family data

Data type Gene families (HOM) Sub families (ORTH)
genefamily_datagenefamily_data.hom.csv.gz (1.20 MB)genefamily_data.orth.csv.gz (1.28 MB)

You can also directly navigate the ftp-directory itself : ftp directory