Oryza sativa ssp. japonica

The rice genome was sequenced because of it's major importance in the world food industry and it's relatively small genome size. Since the first sequenced plant genome (Arabidopsis thalia) was a dicotylous plant it made sense to sequence a monocot next to have a broad taxonomix sampling. Unlike many of the recently sequenced genomes the sequencing has been done using a BAC-by-BAC approach a very costly a labour intensive procedure. But this yields a very high quality genome that can be assembled into chromosomes.

Publication:
The map-based sequence of the rice genome.Nature 436, 793-800 (2005).

Info and Links

Source MSU RGAP 7
PLAZA identifier osa
NCBI link Oryza sativa ssp. japonica
Mitochondrion DQ167400
Chloroplast X15901

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Page 1 of 2803, showing 20 records out of 56051 total, starting on record 1, ending on 20

Gene Transcript Start Stop Strand Chr Type Gene family
OS01G01010 OS01G01010.1 3449 10297 + 1 coding HOM03D000992
OS01G01019 OS01G01019.1 11798 12317 + 1 coding singleton
OS01G01030 OS01G01030.1 12774 15359 + 1 coding HOM03D000238
OS01G01040 OS01G01040.1 16599 19593 + 1 coding HOM03D004941
OS01G01050 OS01G01050.1 23232 26391 + 1 coding HOM03D006120
OS01G01060 OS01G01060.1 27221 28419 + 1 coding HOM03D001172
OS01G01070 OS01G01070.1 29940 34124 + 1 coding HOM03D001181
OS01G01080 OS01G01080.1 35743 41007 + 1 coding HOM03D003358
OS01G01090 OS01G01090.1 44595 47526 + 1 te
OS01G01100 OS01G01100.1 47856 53412 - 1 te
OS01G01110 OS01G01110.1 57157 57972 + 1 coding HOM03D000003
OS01G01115 OS01G01115.1 58658 61090 + 1 coding HOM03D000001
OS01G01120 OS01G01120.1 62104 63345 + 1 coding HOM03D003286
OS01G01130 OS01G01130.1 63670 65950 - 1 coding HOM03D006603
OS01G01140 OS01G01140.1 69675 70131 + 1 coding HOM03D005861
OS01G01150 OS01G01150.1 72903 77008 + 1 coding HOM03D002176
OS01G01160 OS01G01160.1 82507 83864 + 1 coding HOM03D000348
OS01G01170 OS01G01170.1 85379 88583 + 1 coding HOM03D007455
OS01G01180 OS01G01180.1 88986 89204 - 1 coding HOM03D001443
OS01G01190 OS01G01190.1 89825 91468 - 1 coding HOM03D000362