PLAZA Gymnosperms gene overview : PT12G01170

Gene: PT12G01170 (Populus trichocarpa)

Overview

Gene Identifier: PT12G01170
Transcript Identifier: PT12G01170.1
Gene Type: Coding gene
Location: Chr12 : 1043628-1053770 : negative

Family

Gene family: HOM03D000157
(377 genes in 16 species)
specific family
Subfamily: ORTHO03D000251
(33 genes in 15 species)
specific family

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Descriptions

Description (AnnoMine): dependent glutamate synthase 1, chloroplastic/mitochondrial

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
pid	Potri.012G011700.1
id	PAC:27049258

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0055114	IEA	Genome Project	oxidation-reduction process
GO:0008152	IEA	Genome Project	metabolic process
GO:0006537	IEA	Genome Project	glutamate biosynthetic process
GO:0006807	IEA	Genome Project	nitrogen compound metabolic process

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0016491	IEA	Genome Project	oxidoreductase activity
GO:0050660	IEA	Genome Project	flavin adenine dinucleotide binding
GO:0015930	IEA	Genome Project	glutamate synthase activity
GO:0016638	IEA	Genome Project	oxidoreductase activity, acting on the CH-NH2 group of donors
GO:0051536	IEA	InterPro	iron-sulfur cluster binding
GO:0016639	IEA	InterPro	oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor
GO:0003824	IEA	InterPro	catalytic activity

Color Legend

Computational Reviewed Evidence

Electronic Evidence

Experimental Evidence

InterPro	Description
IPR002932	Glutamate synthase, central-C
IPR000583	Class II glutamine amidotransferase domain
IPR002489	Glutamate synthase, alpha subunit, C-terminal
IPR017932	Glutamine amidotransferase type 2 domain
IPR001327	Pyridine nucleotide-disulphide oxidoreductase, NAD-binding domain
IPR023753	Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain
IPR013785	Aldolase-type TIM barrel
IPR006005	Glutamate synthase, NADH/NADPH, small subunit 1
IPR016040	NAD(P)-binding domain
IPR006982	Glutamate synthase, central-N
IPR009051	Alpha-helical ferredoxin
IPR028261	Dihydroprymidine dehydrogenase domain II

Mapman id	Description
12.2.1	N-metabolism.ammonia metabolism.glutamate synthase

No SignalP domains detected for this gene.