Gene: PT09G15860 (Populus trichocarpa)

Overview

Gene Identifier
PT09G15860
Transcript Identifier
PT09G15860.1
Gene Type
Coding gene
Location
Chr09 : 12273155-12279809 : negative

Family

Gene family
HOM03D002571
(45 genes in 16 species)
specific family
Subfamily
ORTHO03D000495
(27 genes in 16 species)
specific family

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Descriptions

Description (AnnoMine)
Serrate RNA effector molecule
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
pidPotri.009G158600.1
idPAC:26987409

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0008380ISOPLAZA Integrative OrthologyRNA splicingAT2G27100
GO:0031053ISOPLAZA Integrative Orthologyprimary miRNA processingAT2G27100
GO:0010267ISOPLAZA Integrative Orthologyproduction of ta-siRNAs involved in RNA interferenceAT2G27100
GO:2000011ISOPLAZA Integrative Orthologyregulation of adaxial/abaxial pattern formationAT2G27100
GO:0048509ISOPLAZA Integrative Orthologyregulation of meristem developmentAT2G27100
GO:0006355ISOPLAZA Integrative Orthologyregulation of transcription, DNA-dependentAT2G27100
GO:0016568ISOPLAZA Integrative Orthologychromatin modificationAT2G27100
GO:0048367ISOPLAZA Integrative Orthologyshoot system developmentAT2G27100

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0046872IEAInterPrometal ion binding
GO:0005515ISOPLAZA Integrative Orthologyprotein bindingAT2G27100

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634ISOPLAZA Integrative OrthologynucleusAT2G27100
GO:0005829ISOPLAZA Integrative OrthologycytosolAT2G27100
GO:0010445ISOPLAZA Integrative Orthologynuclear dicing bodyAT2G27100
GO:0016607ISOPLAZA Integrative Orthologynuclear speckAT2G27100
GO:0005730ISOPLAZA Integrative OrthologynucleolusAT2G27100
GO:0009507ISOPLAZA Integrative OrthologychloroplastAT2G27100

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Computational Reviewed Evidence
Electronic Evidence
Experimental Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR021933Protein of unknown function DUF3546
IPR007042Arsenite-resistance protein 2
IPR007087Zinc finger, C2H2
Mapman id Description
27.3.11RNA.regulation of transcription.C2H2 zinc finger family
No SignalP domains detected for this gene.