Gene: PT04G16120 (Populus trichocarpa)

Overview

Gene Identifier
PT04G16120
Transcript Identifier
PT04G16120.1
Gene Type
Coding gene
Location
Chr04 : 18167081-18173021 : positive

Family

Gene family
HOM03D004286
(30 genes in 16 species)
specific family
Subfamily
ORTHO03D002131
(20 genes in 16 species)
specific family

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Descriptions

Description (AnnoMine)
Squalene synthase
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
pidPotri.004G161200.1
idPAC:26990934

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0009058IEAGenome Projectbiosynthetic process
GO:0008610IEAInterProlipid biosynthetic process
GO:0016126ISOPLAZA Integrative Orthologysterol biosynthetic processAT4G34640

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0016740IEAGenome Projecttransferase activity
GO:0016765IEAInterProtransferase activity, transferring alkyl or aryl (other than methyl) groups
GO:0004310IEAInterProfarnesyl-diphosphate farnesyltransferase activity

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0016021IEAInterProintegral to membrane
GO:0005783ISOPLAZA Integrative Orthologyendoplasmic reticulumAT4G34640
GO:0005886ISOPLAZA Integrative Orthologyplasma membraneAT4G34640
GO:0005789ISOPLAZA Integrative Orthologyendoplasmic reticulum membraneAT4G34640

Color Legend

Computational Reviewed Evidence
Electronic Evidence
Experimental Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR008949Terpenoid synthase
IPR019845Squalene/phytoene synthase, conserved site
IPR006449Farnesyl-diphosphate farnesyltransferase
IPR002060Squalene/phytoene synthase
Mapman id Description
11.8.8lipid metabolism.exotics (steroids, squalene etc).squalene synthase
No SignalP domains detected for this gene.