Gene: PT01G04940 (Populus trichocarpa)

Overview

Gene Identifier
PT01G04940
Transcript Identifier
PT01G04940.1
Gene Type
Coding gene
Location
Chr01 : 3742718-3750984 : negative

Family

Gene family
HOM03D000530
(147 genes in 16 species)
specific family
Subfamily
ORTHO03D030148
(3 genes in 3 species)
specific family

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Descriptions

Description (AnnoMine)
Vegetative incompatibility protein HET-E-1
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
pidPotri.001G049400.2
idPAC:27041510

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006886IEAGenome Projectintracellular protein transport
GO:0016192IEAGenome Projectvesicle-mediated transport
GO:0006355ISOPLAZA Integrative Orthologyregulation of transcription, DNA-dependentAT2G32700
GO:0048358ISOPLAZA Integrative Orthologymucilage pectin biosynthetic processAT2G32700
GO:0045892ISOPLAZA Integrative Orthologynegative regulation of transcription, DNA-dependentAT2G32700
GO:0009790ISOPLAZA Integrative Orthologyembryo developmentAT2G32700
GO:0009908ISOPLAZA Integrative Orthologyflower developmentAT2G32700
GO:0009827ISOPLAZA Integrative Orthologyplant-type cell wall modificationAT2G32700

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0005515IEAGenome Projectprotein binding
GO:0005198IEAGenome Projectstructural molecule activity
GO:0003697IEAGenome Projectsingle-stranded DNA binding
GO:0003713ISOPLAZA Integrative Orthologytranscription coactivator activityAT2G32700

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0030117IEAGenome Projectmembrane coat
GO:0005634ISOPLAZA Integrative OrthologynucleusAT2G32700

Color Legend

Computational Reviewed Evidence
Electronic Evidence
Experimental Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR001680WD40 repeat
IPR017986WD40-repeat-containing domain
IPR015943WD40/YVTN repeat-like-containing domain
IPR019775WD40 repeat, conserved site
IPR020472G-protein beta WD-40 repeat
IPR006594LisH dimerisation motif
IPR013720LisH dimerisation motif, subgroup
Mapman id Description
27.3.58RNA.regulation of transcription.LUG
No SignalP domains detected for this gene.
DatabaseType
PlnTFDBLUG