PLAZA Gymnosperms gene overview : PP00196G00390

Gene: PP00196G00390 (Physcomitrella patens)

Overview

Gene Identifier: PP00196G00390
Transcript Identifier: PP00196G00390.1
Gene Type: Coding gene
Location: scaffold_196 : 549555-554210 : negative

Family

Gene family: HOM03D002444
(47 genes in 16 species)
specific family
Subfamily: ORTHO03D001951
(20 genes in 14 species)
specific family

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Descriptions

Description (AnnoMine): Periplasmic trehalase

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
pid	Pp1s196_77V6.1
id	PAC:18062391

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0005991	IEA	Genome Project	trehalose metabolic process
GO:0005993	ISO	PLAZA Integrative Orthology	trehalose catabolic process	AT4G24040

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0004555	IEA	Genome Project	alpha,alpha-trehalase activity
GO:0003824	IEA	InterPro	catalytic activity

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005886	ISO	PLAZA Integrative Orthology	plasma membrane	AT4G24040

Color Legend

Computational Reviewed Evidence

Electronic Evidence

Experimental Evidence

InterPro	Description
IPR001661	Glycoside hydrolase, family 37
IPR008928	Six-hairpin glycosidase-like
IPR018232	Glycoside hydrolase, family 37, conserved site

Mapman id	Description
3.2.4	minor CHO metabolism.trehalose.trehalase

No SignalP domains detected for this gene.