PLAZA Gymnosperms gene overview : PP00177G00340

Gene: PP00177G00340 (Physcomitrella patens)

Overview

Gene Identifier: PP00177G00340
Transcript Identifier: PP00177G00340.1
Gene Type: Coding gene
Location: scaffold_177 : 338043-339631 : positive

Family

Gene family: HOM03D003256
(37 genes in 16 species)
specific family
Subfamily: ORTHO03D001648
(21 genes in 16 species)
specific family

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Descriptions

Description (AnnoMine): protein HldE

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
pid	Pp1s177_61V6.1
id	PAC:18056615

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006014	IEA	InterPro	D-ribose metabolic process
GO:0005975	IEA	PLAZA Homology	carbohydrate metabolic process	HOM03D002184
GO:0044699	IEA	PLAZA Homology	single-organism process	HOM03D002184

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0016773	IEA	InterPro	phosphotransferase activity, alcohol group as acceptor
GO:0004747	IEA	InterPro	ribokinase activity
GO:0019200	IEA	PLAZA Homology	carbohydrate kinase activity	HOM03D002184

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0009507	ISO	PLAZA Integrative Orthology	chloroplast	AT1G17160
GO:0009570	ISO	PLAZA Integrative Orthology	chloroplast stroma	AT1G17160

Color Legend

Computational Reviewed Evidence

Electronic Evidence

Experimental Evidence

InterPro	Description
IPR002173	Carbohydrate/puine kinase, PfkB, conserved site
IPR011611	Carbohydrate kinase PfkB
IPR002139	Ribokinase

Mapman id	Description
3.5	minor CHO metabolism.others

No SignalP domains detected for this gene.