PLAZA Gymnosperms gene overview : PP00088G00630

Gene: PP00088G00630 (Physcomitrella patens)

Overview

Gene Identifier: PP00088G00630
Transcript Identifier: PP00088G00630.1
Gene Type: Coding gene
Location: scaffold_88 : 867577-872786 : positive

Family

Gene family: HOM03D003358
(36 genes in 16 species)
specific family
Subfamily: ORTHO03D003716
(18 genes in 16 species)
specific family

Loading...please wait

Descriptions

Description (AnnoMine): Sphingosine-1-phosphate lyase

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
pid	Pp1s88_125V6.1
id	PAC:18064157

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0019752	IEA	Genome Project	carboxylic acid metabolic process
GO:0030149	ISO	PLAZA Integrative Orthology	sphingolipid catabolic process	AT1G27980

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0030170	IEA	Genome Project	pyridoxal phosphate binding
GO:0016831	IEA	Genome Project	carboxy-lyase activity
GO:0003824	IEA	InterPro	catalytic activity

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0016020	ISO	PLAZA Integrative Orthology	membrane	AT1G27980
GO:0005783	ISO	PLAZA Integrative Orthology	endoplasmic reticulum	AT1G27980

Color Legend

Computational Reviewed Evidence

Electronic Evidence

Experimental Evidence

InterPro	Description
IPR002129	Pyridoxal phosphate-dependent decarboxylase
IPR015424	Pyridoxal phosphate-dependent transferase
IPR015421	Pyridoxal phosphate-dependent transferase, major region, subdomain 1

Mapman id	Description
11.8.1	lipid metabolism.exotics (steroids, squalene etc).sphingolipids

No SignalP domains detected for this gene.