PLAZA Gymnosperms gene overview : PP00023G00780

Gene: PP00023G00780 (Physcomitrella patens)

Overview

Gene Identifier: PP00023G00780
Transcript Identifier: PP00023G00780.1
Gene Type: Coding gene
Location: scaffold_23 : 1423666-1427390 : negative

Family

Gene family: HOM03D004286
(30 genes in 16 species)
specific family

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Descriptions

Description (AnnoMine): Squalene synthase

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
pid	Pp1s23_185V6.1
id	PAC:18065535

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0009058	IEA	Genome Project	biosynthetic process
GO:0008610	IEA	InterPro	lipid biosynthetic process

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0016740	IEA	Genome Project	transferase activity
GO:0004310	IEA	InterPro	farnesyl-diphosphate farnesyltransferase activity

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0016021	IEA	InterPro	integral to membrane

Color Legend

Computational Reviewed Evidence

Electronic Evidence

Experimental Evidence

InterPro	Description
IPR008949	Terpenoid synthase
IPR002060	Squalene/phytoene synthase
IPR006449	Farnesyl-diphosphate farnesyltransferase

Mapman id	Description
11.8.8	lipid metabolism.exotics (steroids, squalene etc).squalene synthase

No SignalP domains detected for this gene.