PLAZA Gymnosperms gene overview : PP00002G01810

Gene: PP00002G01810 (Physcomitrella patens)

Overview

Gene Identifier: PP00002G01810
Transcript Identifier: PP00002G01810.1
Gene Type: Coding gene
Location: scaffold_2 : 1679132-1682343 : negative

Family

Gene family: HOM03D000294
(225 genes in 15 species)
specific family
Subfamily: ORTHO03D000057
(57 genes in 15 species)
specific family

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Descriptions

Description (AnnoMine): Probable metal-nicotianamine transporter

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
pid	Pp1s2_335V6.1
id	PAC:18052782

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0055085	IEA	Genome Project	transmembrane transport
GO:0048316	ISO	PLAZA Integrative Orthology	seed development	AT5G53550 AT4G24120
GO:0003006	ISO	PLAZA Integrative Orthology	developmental process involved in reproduction	AT5G53550 AT4G24120
GO:0009624	ISO	PLAZA Integrative Orthology	response to nematode	AT5G53550
GO:0010043	ISO	PLAZA Integrative Orthology	response to zinc ion	AT5G24380
GO:0010039	ISO	PLAZA Integrative Orthology	response to iron ion	AT5G24380 AT4G24120
GO:0006826	ISO	PLAZA Integrative Orthology	iron ion transport	AT5G24380
GO:0044765	IEA	PLAZA Homology	single-organism transport	HOM03D000408
GO:0006810	IEA	PLAZA Homology	transport	HOM03D000408
GO:0051234	IEA	PLAZA Homology	establishment of localization	HOM03D000408
GO:0051179	IEA	PLAZA Homology	localization	HOM03D000408

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0051980	ISO	PLAZA Integrative Orthology	iron-nicotianamine transmembrane transporter activity	AT5G53550 AT4G24120

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005886	ISO	PLAZA Integrative Orthology	plasma membrane	AT5G53550 AT5G24380 AT4G24120 AT3G17650 AT1G65730 AT1G48370
GO:0005774	ISO	PLAZA Integrative Orthology	vacuolar membrane	AT5G41000 AT3G27020

Color Legend

Computational Reviewed Evidence

Electronic Evidence

Experimental Evidence

InterPro	Description
IPR004813	Oligopeptide transporter, OPT superfamily

Mapman id	Description
34.13	transport.peptides and oligopeptides

No SignalP domains detected for this gene.