PLAZA Gymnosperms gene overview : OS05G01635

Gene: OS05G01635 (Oryza sativa ssp. japonica)

Overview

Gene Identifier: OS05G01635
Transcript Identifier: OS05G01635.1
Gene Type: Coding gene
Location: 5 : 376470-378246 : negative

Family

Gene family: HOM03D000001
(10384 genes in 16 species)
specific family

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Descriptions

Description: expressed protein

Description (AnnoMine): Pentatricopeptide repeat-containing protein

Identifiers

Identifier	Name
transcript_id	LOC_OS05G01635.1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

...sequences.
...the multiple sequence alignment of the gene family.
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...the gene in Genomeview, a genome browser
...all colinear gene pairs.

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0005515	IEA	InterPro	protein binding
GO:0005488	IEA	PLAZA Homology	binding	HOM03D000001

Color Legend

Computational Reviewed Evidence

Electronic Evidence

Experimental Evidence

InterPro	Description
IPR011990	Tetratricopeptide-like helical
IPR002885	Pentatricopeptide repeat

Mapman id	Description
27.1	RNA.processing
27.3.25	RNA.regulation of transcription.MYB domain transcription factor family
34.99	transport.misc

No SignalP domains detected for this gene.