Gene: ATR_00107G00410 (Amborella trichopoda)

Overview

Gene Identifier
ATR_00107G00410
Transcript Identifier
ATR_00107G00410.1
Gene Type
Coding gene
Location
scaffold00107 : 2068112-2089838 : negative

Family

Gene family
HOM03D000938
(97 genes in 16 species)
specific family
Subfamily
ORTHO03D000245
(33 genes in 15 species)
specific family

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Descriptions

Description (AnnoMine)
tract-binding protein homolog 2
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
GeneNameevm_27.TU.AmTr_v1.0_scaffold00107.42
idevm_27.model.AmTr_v1.0_scaffold00107.42

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0009845ISOPLAZA Integrative Orthologyseed germinationAT5G53180 AT3G01150
GO:0000381ISOPLAZA Integrative Orthologyregulation of alternative mRNA splicing, via spliceosomeAT5G53180 AT3G01150
GO:0043484ISOPLAZA Integrative Orthologyregulation of RNA splicingAT5G53180 AT3G01150
GO:0006417ISOPLAZA Integrative Orthologyregulation of translationAT5G53180 AT3G01150
GO:0009846ISOPLAZA Integrative Orthologypollen germinationAT5G53180 AT3G01150

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0000166IEAInterPronucleotide binding
GO:0003676IEAInterPronucleic acid binding
GO:0003723ISOPLAZA Integrative OrthologyRNA bindingAT5G53180
GO:1901265IEAPLAZA Homologynucleoside phosphate bindingHOM03D001156

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0000932ISOPLAZA Integrative Orthologycytoplasmic mRNA processing bodyAT5G53180 AT3G01150
GO:0005737ISOPLAZA Integrative OrthologycytoplasmAT5G53180 AT3G01150
GO:0005634ISOPLAZA Integrative OrthologynucleusAT5G53180 AT3G01150

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Computational Reviewed Evidence
Electronic Evidence
Experimental Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR000504RNA recognition motif domain
IPR012677Nucleotide-binding, alpha-beta plait
No MapMan annotations defined for this gene.
No SignalP domains detected for this gene.