PLAZA Gymnosperms gene overview : ATR_00046G01140

Gene: ATR_00046G01140 (Amborella trichopoda)

Overview

Gene Identifier: ATR_00046G01140
Transcript Identifier: ATR_00046G01140.1
Gene Type: Coding gene
Location: scaffold00046 : 3365119-3368798 : positive

Family

Gene family: HOM03D000648
(128 genes in 15 species)
specific family
Subfamily: ORTHO03D050396
(2 genes in 2 species)
specific family

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Descriptions

Description (AnnoMine): Probable trehalose-phosphate phosphatase

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
GeneName	evm_27.TU.AmTr_v1.0_scaffold00046.114
id	evm_27.model.AmTr_v1.0_scaffold00046.114

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0008152	IEA	InterPro	metabolic process
GO:0005992	IEA	InterPro	trehalose biosynthetic process
GO:0009312	IEA	PLAZA Homology	oligosaccharide biosynthetic process	HOM03D000470
GO:0046351	IEA	PLAZA Homology	disaccharide biosynthetic process	HOM03D000470
GO:0009311	IEA	PLAZA Homology	oligosaccharide metabolic process	HOM03D000470
GO:0044262	IEA	PLAZA Homology	cellular carbohydrate metabolic process	HOM03D000470
GO:0005975	IEA	PLAZA Homology	carbohydrate metabolic process	HOM03D000470
GO:0016051	IEA	PLAZA Homology	carbohydrate biosynthetic process	HOM03D000470
GO:0034637	IEA	PLAZA Homology	cellular carbohydrate biosynthetic process	HOM03D000470
GO:0044723	IEA	PLAZA Homology	single-organism carbohydrate metabolic process	HOM03D000470
GO:0044711	IEA	PLAZA Homology	single-organism biosynthetic process	HOM03D000470
GO:0005991	IEA	PLAZA Homology	trehalose metabolic process	HOM03D000470
GO:0005984	IEA	PLAZA Homology	disaccharide metabolic process	HOM03D000470

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0003824	IEA	InterPro	catalytic activity
GO:0004805	ISO	PLAZA Integrative Orthology	trehalose-phosphatase activity	AT5G51460

Color Legend

Computational Reviewed Evidence

Electronic Evidence

Experimental Evidence

InterPro	Description
IPR023214	HAD-like domain
IPR003337	Trehalose-phosphatase
IPR006379	HAD-superfamily hydrolase, subfamily IIB

No MapMan annotations defined for this gene.

No SignalP domains detected for this gene.