Gene: AT5G53180 (Arabidopsis thaliana)

Overview

Gene Identifier
AT5G53180
Transcript Identifier
AT5G53180.1
Gene Type
Coding gene
Location
5 : 21568393-21571537 : negative

Family

Gene family
HOM03D000938
(97 genes in 16 species)
specific family
Subfamily
ORTHO03D000245
(33 genes in 15 species)
specific family

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Descriptions

Description
polypyrimidine tract-binding protein 2
Curated Summary
Encodes one of the two polypyrimidine tract-binding (PTB) protein homologs in the Arabidopsis genome. Double mutants have defects in pollen germination.
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Identifiers

Identifier Name
aliasATPTB2
aliasPOLYPYRIMIDINE TRACT-BINDING PROTEIN 2
aliaspolypyrimidine tract-binding protein 2
aliasPTB2
uniprotQ9FGL9

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0009846IGIUniProtpollen germination1
GO:0006417IEPUniProtregulation of translation1
GO:0043484IDAGene Ontologyregulation of RNA splicing1
GO:0000381IMPUniProtregulation of alternative mRNA splicing, via spliceosome1
GO:0009845IMPUniProtseed germination1
GO:0006397IEAUniProtmRNA processing
GO:0008380IEAUniProtRNA splicing

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003723IDA, ISS, UniProtRNA binding1
GO:0000166IEAUniProtnucleotide binding
GO:0003676IEAInterPronucleic acid binding
GO:1901265IEAPLAZA Homologynucleoside phosphate bindingHOM03D001156

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634IDA, ISM, UniProtnucleus1
GO:0005737IDAGene Ontologycytoplasm1
GO:0000932IDAUniProtcytoplasmic mRNA processing body1

Color Legend

Computational Reviewed Evidence
Electronic Evidence
Experimental Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR012677Nucleotide-binding, alpha-beta plait
IPR000504RNA recognition motif domain
Mapman id Description
27.1RNA.processing
No SignalP domains detected for this gene.