PLAZA Gymnosperms gene overview : AT5G52920

Gene: AT5G52920 (Arabidopsis thaliana)

Overview

Gene Identifier: AT5G52920
Transcript Identifier: AT5G52920.1
Gene Type: Coding gene
Location: 5 : 21463680-21466612 : positive

Family

Gene family: HOM03D000219
(276 genes in 16 species)
specific family
Subfamily: ORTHO03D000421
(28 genes in 16 species)
specific family

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Descriptions

Description: plastidic pyruvate kinase beta subunit 1

Curated Summary: encodes a dominant chloroplast pyruvate kinase beta subunit. Important for seed oil biosynthesis. Ubiquitously expressed, with significantly increased expression in maturing seeds. The mutant plant has wrinkled seeds, with a 50-70% reduction in seed fatty acid content.

Identifiers

Identifier	Name
alias	PKP-BETA1
alias	PLASTIDIAL PYRUVATE KINASE 1
alias	PKP2
alias	PLASTIDIAL PYRUVATE KINASE 2
alias	PKP1
alias	plastidic pyruvate kinase beta subunit 1
uniprot	Q9FLW9

Toolbox

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...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006096	IEA, ISS	UniProt	glycolysis	1 2 3 4 5 6 7 8 9 10 11
GO:0046686	IEP	UniProt	response to cadmium ion	1 2 3 4 5 6 7 8 9 10 11 12
GO:0010431	IMP	UniProt	seed maturation	1 2 3 4 5 6 7 8 9 10 11 12
GO:0006633	IMP	UniProt	fatty acid biosynthetic process	1 2 3 4 5 6 7 8 9 10 11 12
GO:0048316	IMP	Gene Ontology	seed development	1
GO:0006629	IGI	Gene Ontology	lipid metabolic process	1
GO:1901575	IEA	PLAZA Homology	organic substance catabolic process	HOM03D000273
GO:0044763	IEA	PLAZA Homology	single-organism cellular process	HOM03D000273
GO:0006091	IEA	PLAZA Homology	generation of precursor metabolites and energy	HOM03D000273
GO:0016052	IEA	PLAZA Homology	carbohydrate catabolic process	HOM03D000273
GO:0044710	IEA	PLAZA Homology	single-organism metabolic process	HOM03D000273
GO:0044712	IEA	PLAZA Homology	single-organism catabolic process	HOM03D000273
GO:0006007	IEA	PLAZA Homology	glucose catabolic process	HOM03D000273
GO:0006006	IEA	PLAZA Homology	glucose metabolic process	HOM03D000273
GO:0005996	IEA	PLAZA Homology	monosaccharide metabolic process	HOM03D000273
GO:0046365	IEA	PLAZA Homology	monosaccharide catabolic process	HOM03D000273
GO:0005975	IEA	PLAZA Homology	carbohydrate metabolic process	HOM03D000273
GO:0009056	IEA	PLAZA Homology	catabolic process	HOM03D000273
GO:0019318	IEA	PLAZA Homology	hexose metabolic process	HOM03D000273
GO:0044723	IEA	PLAZA Homology	single-organism carbohydrate metabolic process	HOM03D000273
GO:0044724	IEA	PLAZA Homology	single-organism carbohydrate catabolic process	HOM03D000273
GO:0019320	IEA	PLAZA Homology	hexose catabolic process	HOM03D000273

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0004743	IDA, ISSIEA,	UniProt	pyruvate kinase activity	1 2 3 4 5 6 7 8 9 10 11 12
GO:0000287	IDA, IEA,	UniProt	magnesium ion binding	1 2 3 4 5 6 7 8 9 10 11 12
GO:0030955	IDA, IEA,	UniProt	potassium ion binding	1 2 3 4 5 6 7 8 9 10 11 12
GO:0003824	IEA	InterPro	catalytic activity
GO:0005524	IEA	UniProt	ATP binding	1 2 3 4 5 6 7 8 9 10 11
GO:0043169	IEA	PLAZA Homology	cation binding	HOM03D000273
GO:0031420	IEA	PLAZA Homology	alkali metal ion binding	HOM03D000273
GO:0046872	IEA	PLAZA Homology	metal ion binding	HOM03D000273
GO:0016301	IEA	PLAZA Homology	kinase activity	HOM03D000273
GO:0016773	IEA	PLAZA Homology	phosphotransferase activity, alcohol group as acceptor	HOM03D000273
GO:0016772	IEA	PLAZA Homology	transferase activity, transferring phosphorus-containing groups	HOM03D000273
GO:0016740	IEA	PLAZA Homology	transferase activity	HOM03D000273

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0009507	IDA, ISM	Gene Ontology	chloroplast	1
GO:0005739	IDA	UniProt	mitochondrion	1 2 3 4 5 6 7 8 9 10 11 12
GO:0009570	IDA	UniProt	chloroplast stroma	1 2 3 4 5 6 7 8 9 10 11 12
GO:0005829	RCA	Gene Ontology	cytosol	1

Color Legend

Computational Reviewed Evidence

Electronic Evidence

Experimental Evidence

InterPro	Description
IPR001697	Pyruvate kinase
IPR015806	Pyruvate kinase, beta-barrel insert domain
IPR015795	Pyruvate kinase, C-terminal
IPR015793	Pyruvate kinase, barrel
IPR015813	Pyruvate/Phosphoenolpyruvate kinase-like domain
IPR015794	Pyruvate kinase, alpha/beta
IPR011037	Pyruvate kinase-like, insert domain
IPR018209	Pyruvate kinase, active site

Mapman id	Description
4.2.14	glycolysis.plastid branch.pyruvate kinase (PK)
11.1.30	lipid metabolism.FA synthesis and FA elongation.pyruvate kinase

No SignalP domains detected for this gene.