Gene: AT5G48140 (Arabidopsis thaliana)

Overview

Gene Identifier
AT5G48140
Transcript Identifier
AT5G48140.1
Gene Type
Coding gene
Location
5 : 19518907-19520412 : negative

Family

Gene family
HOM03D000122
(471 genes in 15 species)
specific family

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Descriptions

Description
Pectin lyase-like superfamily protein
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Identifiers

Identifier Name

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0005975ISS, IEAGene Ontologycarbohydrate metabolic process
GO:0009827RCAGene Ontologyplant-type cell wall modification1
GO:0008152IEAPLAZA Homologymetabolic processHOM03D000052
GO:0071704IEAPLAZA Homologyorganic substance metabolic processHOM03D000052
GO:0044238IEAPLAZA Homologyprimary metabolic processHOM03D000052

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0004650ISS, IEAGene Ontologypolygalacturonase activity
GO:0016787IEAPLAZA Homologyhydrolase activityHOM03D000052
GO:0016798IEAPLAZA Homologyhydrolase activity, acting on glycosyl bondsHOM03D000052
GO:0003824IEAPLAZA Homologycatalytic activityHOM03D000052
GO:0004553IEAPLAZA Homologyhydrolase activity, hydrolyzing O-glycosyl compoundsHOM03D000052

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005576ISMGene Ontologyextracellular region
GO:0009505ISOPLAZA Tree-based Orthologyplant-type cell wallAT3G07830

Color Legend

Computational Reviewed Evidence
Electronic Evidence
Experimental Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR000743Glycoside hydrolase, family 28
IPR006626Parallel beta-helix repeat
IPR011050Pectin lyase fold/virulence factor
IPR012334Pectin lyase fold
Mapman id Description
10.6.3cell wall.degradation.pectate lyases and polygalacturonases
SignalP Description
SignalP-noTMSignal Peptide detected using noTM network