PLAZA Gymnosperms gene overview : AT5G40610

Gene: AT5G40610 (Arabidopsis thaliana)

Overview

Gene Identifier: AT5G40610
Transcript Identifier: AT5G40610.1
Gene Type: Coding gene
Location: 5 : 16265071-16267258 : negative

Family

Gene family: HOM03D008318
(13 genes in 9 species)
specific family

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Descriptions

Description: NAD-dependent glycerol-3-phosphate dehydrogenase family protein

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Identifiers

Identifier	Name
alias	Glycerol-3-phosphate dehydrogenase plastidic
alias	GPDHp
uniprot	Q9SCX9

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006072	ISS, IEA	Gene Ontology	glycerol-3-phosphate metabolic process
GO:0046167	IDA	Gene Ontology	glycerol-3-phosphate biosynthetic process	1
GO:0005975	IEA	UniProt	carbohydrate metabolic process	1 2
GO:0046168	IEA	UniProt	glycerol-3-phosphate catabolic process	1 2
GO:0055114	IEA	InterPro	oxidation-reduction process
GO:0006650	IEA	UniProt	glycerophospholipid metabolic process	1 2
GO:0008654	IEA	UniProt	phospholipid biosynthetic process	1 2

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0004367	IEA, IDA, ISS	UniProt	glycerol-3-phosphate dehydrogenase [NAD+] activity	1 2 3
GO:0050662	IEA	InterPro	coenzyme binding
GO:0051287	IEA	UniProt	NAD binding	1 2
GO:0016491	IEA	InterPro	oxidoreductase activity
GO:0042803	IEA	InterPro	protein homodimerization activity
GO:0016616	IEA	InterPro	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0009331	IEA, ISS	UniProt	glycerol-3-phosphate dehydrogenase complex	1 2
GO:0009507	IEA, IDA, ISM	UniProt	chloroplast	1 2 3
GO:0005737	IEA	InterPro	cytoplasm

Color Legend

Computational Reviewed Evidence

Electronic Evidence

Experimental Evidence

InterPro	Description
IPR006168	Glycerol-3-phosphate dehydrogenase, NAD-dependent
IPR006109	Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal
IPR011128	Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal
IPR008927	6-phosphogluconate dehydrogenase, C-terminal-like
IPR013328	Dehydrogenase, multihelical
IPR016040	NAD(P)-binding domain
IPR017751	Glycerol-3-phosphate dehydrogenase, NAD-dependent, eukaryotic

Mapman id	Description
11.5.2	lipid metabolism.glyceral metabolism.Glycerol-3-phosphate dehydrogenase (NAD+)

No SignalP domains detected for this gene.