PLAZA Gymnosperms gene overview : AT5G37600

Gene: AT5G37600 (Arabidopsis thaliana)

Overview

Gene Identifier: AT5G37600
Transcript Identifier: AT5G37600.1
Gene Type: Coding gene
Location: 5 : 14933574-14935656 : negative

Family

Gene family: HOM03D000872
(102 genes in 16 species)
specific family
Subfamily: ORTHO03D000381
(29 genes in 14 species)
specific family

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Descriptions

Description: glutamine synthase clone R1

Curated Summary: encodes a cytosolic glutamine synthetase, the enzyme has high affinity with substrate ammonium

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Identifiers

Identifier	Name
alias	ATGLN1;1
alias	ARABIDOPSIS GLUTAMINE SYNTHASE 1;1
alias	ATGSR1
alias	GLN1;1
alias	ARABIDOPSIS THALIANA GLUTAMINE SYNTHASE CLONE R1
alias	GSR 1
alias	GLUTAMINE SYNTHASE 1;1
alias	glutamine synthase clone R1
uniprot	Q56WN1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0042128	TAS	UniProt	nitrate assimilation	1 2 3 4 5 6
GO:0010150	IEP	UniProt	leaf senescence	1 2 3 4 5 6
GO:0009744	RCA	Gene Ontology	response to sucrose	1
GO:0009749	RCA	Gene Ontology	response to glucose	1
GO:0009750	RCA	Gene Ontology	response to fructose	1
GO:0006807	IEA	InterPro	nitrogen compound metabolic process
GO:0006542	IEA	UniProt	glutamine biosynthetic process	1 2 3 4 5
GO:0009399	IEA	UniProt	nitrogen fixation	1 2 3 4 5
GO:0009651	ISO	PLAZA Tree-based Orthology	response to salt stress	AT1G66200
GO:0009084	IEA	PLAZA Homology	glutamine family amino acid biosynthetic process	HOM03D000796
GO:0009064	IEA	PLAZA Homology	glutamine family amino acid metabolic process	HOM03D000796
GO:1901607	IEA	PLAZA Homology	alpha-amino acid biosynthetic process	HOM03D000796
GO:0008652	IEA	PLAZA Homology	cellular amino acid biosynthetic process	HOM03D000796
GO:0006541	IEA	PLAZA Homology	glutamine metabolic process	HOM03D000796

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0004356	IDA, ISSIEA,	UniProt	glutamate-ammonia ligase activity	1 2 3 4 5 6
GO:0005515	IPI	Gene Ontology	protein binding	1
GO:0005507	IDA	UniProt	copper ion binding	1 2 3 4 5 6
GO:0003824	IEA	InterPro	catalytic activity
GO:0005524	IEA	UniProt	ATP binding	1 2 3 4 5
GO:0016880	IEA	PLAZA Homology	acid-ammonia (or amide) ligase activity	HOM03D000796
GO:0016879	IEA	PLAZA Homology	ligase activity, forming carbon-nitrogen bonds	HOM03D000796
GO:0016211	IEA	PLAZA Homology	ammonia ligase activity	HOM03D000796

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005737	ISM	Gene Ontology	cytoplasm
GO:0005829	TAS	Gene Ontology	cytosol	1
GO:0022626	IDA	UniProt	cytosolic ribosome	1 2 3 4 5 6
GO:0005618	IDA	UniProt	cell wall	1 2 3 4 5 6
GO:0005886	IDA	UniProt	plasma membrane	1 2 3 4 5 6
GO:0009506	IDA	UniProt	plasmodesma	1 2 3 4 5 6
GO:0009570	ISO	PLAZA Tree-based Orthology	chloroplast stroma	AT1G66200
GO:0048046	ISO	PLAZA Tree-based Orthology	apoplast	AT1G66200
GO:0005773	ISO	PLAZA Tree-based Orthology	vacuole	AT1G66200
GO:0009941	ISO	PLAZA Tree-based Orthology	chloroplast envelope	AT1G66200

Color Legend

Computational Reviewed Evidence

Electronic Evidence

Experimental Evidence

InterPro	Description
IPR027303	Glutamine synthetase, glycine-rich site
IPR008146	Glutamine synthetase, catalytic domain
IPR014746	Glutamine synthetase/guanido kinase, catalytic domain
IPR008147	Glutamine synthetase, beta-Grasp
IPR027302	Glutamine synthetase, N-terminal conserved site

Mapman id	Description
12.2.2	N-metabolism.ammonia metabolism.glutamine synthetase

No SignalP domains detected for this gene.