Gene: AT5G23260 (Arabidopsis thaliana)

Overview

Gene Identifier
AT5G23260
Transcript Identifier
AT5G23260.2
Gene Type
Coding gene
Location
5 : 7836442-7838340 : positive

Family

Gene family
HOM03D000048
(929 genes in 16 species)
specific family
Subfamily
ORTHO03D007161
(13 genes in 12 species)
specific family

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Descriptions

Description
K-box region and MADS-box transcription factor family protein
Curated Summary
Encodes a MADS box protein. Regulates proanthocyanidin biosynthesis in the inner-most cell layer of the seed coat. Also controls cell shape of the inner-most cell layer of the seed coat. Also shown to be necessary for determining the identity of the endothelial layer within the ovule. Paralogous to GOA. Plays a maternal role in fertilization and seed development.
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Identifiers

Identifier Name
aliasTRANSPARENT TESTA16
aliasARABIDOPSIS BSISTER
aliasTT16
aliasAGL32
aliasABS
aliasAGAMOUS-like 32
uniprotQ8RYD9

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0008360IMPUniProtregulation of cell shape1 2 3 4 5
GO:2000029IMPUniProtregulation of proanthocyanidin biosynthetic process1 2 3 4 5
GO:0048316IMP, IGIUniProtseed development1 2 3 4 5 6
GO:0048481IMP, IGI, RCA, UniProtovule development1 2 3 4 5 6 7
GO:0080155IGIUniProtregulation of double fertilization forming a zygote and endosperm1 2 3 4 5
GO:0010048RCAGene Ontologyvernalization response1
GO:0043481RCAGene Ontologyanthocyanin accumulation in tissues in response to UV light1
GO:0048440RCAGene Ontologycarpel development1
GO:0006355IEAInterProregulation of transcription, DNA-dependent
GO:0009813IEAUniProtflavonoid biosynthetic process1 2 3 4
GO:0006351IEAUniProttranscription, DNA-templated1 2 3 4
GO:0010468IEAPLAZA Homologyregulation of gene expressionHOM03D000038
GO:0010467IEAPLAZA Homologygene expressionHOM03D000038
GO:0006807IEAPLAZA Homologynitrogen compound metabolic processHOM03D000038
GO:0051252IEAPLAZA Homologyregulation of RNA metabolic processHOM03D000038
GO:0051171IEAPLAZA Homologyregulation of nitrogen compound metabolic processHOM03D000038
GO:0044260IEAPLAZA Homologycellular macromolecule metabolic processHOM03D000038
GO:0019222IEAPLAZA Homologyregulation of metabolic processHOM03D000038
GO:0019219IEAPLAZA Homologyregulation of nucleobase-containing compound metabolic processHOM03D000038
GO:0034641IEAPLAZA Homologycellular nitrogen compound metabolic processHOM03D000038
GO:0034645IEAPLAZA Homologycellular macromolecule biosynthetic processHOM03D000038
GO:0050789IEAPLAZA Homologyregulation of biological processHOM03D000038
GO:0009889IEAPLAZA Homologyregulation of biosynthetic processHOM03D000038
GO:0018130IEAPLAZA Homologyheterocycle biosynthetic processHOM03D000038
GO:0043170IEAPLAZA Homologymacromolecule metabolic processHOM03D000038
GO:0019438IEAPLAZA Homologyaromatic compound biosynthetic processHOM03D000038
GO:0046483IEAPLAZA Homologyheterocycle metabolic processHOM03D000038
GO:0016070IEAPLAZA HomologyRNA metabolic processHOM03D000038
GO:0009987IEAPLAZA Homologycellular processHOM03D000038
GO:0044271IEAPLAZA Homologycellular nitrogen compound biosynthetic processHOM03D000038
GO:0065007IEAPLAZA Homologybiological regulationHOM03D000038
GO:0010556IEAPLAZA Homologyregulation of macromolecule biosynthetic processHOM03D000038
GO:0006139IEAPLAZA Homologynucleobase-containing compound metabolic processHOM03D000038
GO:0032774IEAPLAZA HomologyRNA biosynthetic processHOM03D000038
GO:0006725IEAPLAZA Homologycellular aromatic compound metabolic processHOM03D000038
GO:1901576IEAPLAZA Homologyorganic substance biosynthetic processHOM03D000038
GO:0090304IEAPLAZA Homologynucleic acid metabolic processHOM03D000038
GO:0080090IEAPLAZA Homologyregulation of primary metabolic processHOM03D000038
GO:2001141IEAPLAZA Homologyregulation of RNA biosynthetic processHOM03D000038
GO:0044237IEAPLAZA Homologycellular metabolic processHOM03D000038
GO:0044238IEAPLAZA Homologyprimary metabolic processHOM03D000038
GO:0009058IEAPLAZA Homologybiosynthetic processHOM03D000038
GO:0009059IEAPLAZA Homologymacromolecule biosynthetic processHOM03D000038
GO:0060255IEAPLAZA Homologyregulation of macromolecule metabolic processHOM03D000038
GO:2000112IEAPLAZA Homologyregulation of cellular macromolecule biosynthetic processHOM03D000038
GO:0031323IEAPLAZA Homologyregulation of cellular metabolic processHOM03D000038
GO:0031326IEAPLAZA Homologyregulation of cellular biosynthetic processHOM03D000038
GO:1901360IEAPLAZA Homologyorganic cyclic compound metabolic processHOM03D000038
GO:1901362IEAPLAZA Homologyorganic cyclic compound biosynthetic processHOM03D000038
GO:0034654IEAPLAZA Homologynucleobase-containing compound biosynthetic processHOM03D000038
GO:0050794IEAPLAZA Homologyregulation of cellular processHOM03D000038
GO:0008152IEAPLAZA Homologymetabolic processHOM03D000038
GO:0071704IEAPLAZA Homologyorganic substance metabolic processHOM03D000038
GO:0044249IEAPLAZA Homologycellular biosynthetic processHOM03D000038

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003700IMP, ISSIEA, UniProtsequence-specific DNA binding transcription factor activity1 2 3 4 5
GO:0005515IPIGene Ontologyprotein binding1
GO:0046983IEAInterProprotein dimerization activity
GO:0003677IEAUniProtDNA binding1 2 3 4
GO:0097159IEAPLAZA Homologyorganic cyclic compound bindingHOM03D000038
GO:0003676IEAPLAZA Homologynucleic acid bindingHOM03D000038
GO:0005488IEAPLAZA HomologybindingHOM03D000038
GO:1901363IEAPLAZA Homologyheterocyclic compound bindingHOM03D000038
GO:0001071IEAPLAZA Homologynucleic acid binding transcription factor activityHOM03D000038

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634IEA, ISMUniProtnucleus1 2 3 4
GO:0043231IEAPLAZA Homologyintracellular membrane-bounded organelleHOM03D000038
GO:0005622IEAPLAZA HomologyintracellularHOM03D000038
GO:0043226IEAPLAZA HomologyorganelleHOM03D000038
GO:0043227IEAPLAZA Homologymembrane-bounded organelleHOM03D000038
GO:0043229IEAPLAZA Homologyintracellular organelleHOM03D000038
GO:0044464IEAPLAZA Homologycell partHOM03D000038
GO:0044424IEAPLAZA Homologyintracellular partHOM03D000038
GO:0005623IEAPLAZA HomologycellHOM03D000038

Color Legend

Computational Reviewed Evidence
Electronic Evidence
Experimental Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR002487Transcription factor, K-box
IPR002100Transcription factor, MADS-box
Mapman id Description
27.3.24RNA.regulation of transcription.MADS box transcription factor family
No SignalP domains detected for this gene.
DatabaseType
PlnTFDBMADS
PlantTFDBMIKC