PLAZA Gymnosperms gene overview : AT5G14580

Gene: AT5G14580 (Arabidopsis thaliana)

Overview

Gene Identifier: AT5G14580
Transcript Identifier: AT5G14580.1
Gene Type: Coding gene
Location: 5 : 4697612-4703013 : negative

Family

Gene family: HOM03D001142
(84 genes in 16 species)
specific family
Subfamily: ORTHO03D008431
(11 genes in 11 species)
specific family

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Descriptions

Description: polyribonucleotide nucleotidyltransferase, putative

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Identifiers

Identifier	Name
uniprot	Q9S7G6

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0000957	IGI	UniProt	mitochondrial RNA catabolic process	1 2 3 4
GO:0000963	IGI	UniProt	mitochondrial RNA processing	1 2 3 4
GO:0042991	RCA	Gene Ontology	transcription factor import into nucleus	1
GO:0006396	IEA	InterPro	RNA processing
GO:0006402	IEA	UniProt	mRNA catabolic process	1 2 3
GO:0006397	IEA	UniProt	mRNA processing	1 2 3
GO:0006364	IEA	UniProt	rRNA processing	1 2 3
GO:0008033	IEA	UniProt	tRNA processing	1 2 3

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0000175	IGI, ISSIEA,	UniProt	3'-5'-exoribonuclease activity	1 2 3 4
GO:0003676	ISS	Gene Ontology	nucleic acid binding
GO:0003723	IEA, ISS	UniProt	RNA binding	1 2 3
GO:0004654	IGI, IEA,	UniProt	polyribonucleotide nucleotidyltransferase activity	1 2 3 4

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005739	IEA, ISM	UniProt	mitochondrion	1 2 3

Color Legend

Computational Reviewed Evidence

Electronic Evidence

Experimental Evidence

InterPro	Description
IPR012162	Polyribonucleotide nucleotidyltransferase
IPR003029	Ribosomal protein S1, RNA-binding domain
IPR001247	Exoribonuclease, phosphorolytic domain 1
IPR022967	RNA-binding domain, S1
IPR015847	Exoribonuclease, phosphorolytic domain 2
IPR015848	Polyribonucleotide nucleotidyltransferase, RNA-binding domain
IPR020568	Ribosomal protein S5 domain 2-type fold
IPR012340	Nucleic acid-binding, OB-fold
IPR027408	PNPase/RNase PH domain

Mapman id	Description
27.1	RNA.processing

No SignalP domains detected for this gene.