PLAZA Gymnosperms gene overview : AT4G30950

Gene: AT4G30950 (Arabidopsis thaliana)

Overview

Gene Identifier: AT4G30950
Transcript Identifier: AT4G30950.1
Gene Type: Coding gene
Location: 4 : 15057278-15059673 : negative

Family

Gene family: HOM03D001143
(84 genes in 15 species)
specific family
Subfamily: ORTHO03D001812
(20 genes in 15 species)
specific family

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Descriptions

Description: fatty acid desaturase 6

Curated Summary: Chloroplastic enzyme responsible for the synthesis of 16:2 and 18:2 fatty acids from galactolipids, sulpholipids and phosphatidylglycerol. Uses ferredoxin as electron donor. Gene mutation resulted in reduced level of unsaturated fatty acids leading to susceptibility to photoinhibition.

Identifiers

Identifier	Name
alias	SFD4
alias	STEAROYL DESATURASE DEFICIENCY 4
alias	FADC
alias	fatty acid desaturase 6
alias	FATTY ACID DESATURASE C
alias	FAD6
uniprot	P46312

Toolbox

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...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0010205	IMP	UniProt	photoinhibition	1 2 3 4 5
GO:0006633	TAS	UniProt	fatty acid biosynthetic process	1 2 3 4 5
GO:0000096	RCA	Gene Ontology	sulfur amino acid metabolic process	1
GO:0006546	RCA	Gene Ontology	glycine catabolic process	1
GO:0006636	IEA, RCA	UniProt	unsaturated fatty acid biosynthetic process	1 2 3 4 5
GO:0006655	RCA	Gene Ontology	phosphatidylglycerol biosynthetic process	1
GO:0006733	RCA	Gene Ontology	oxidoreduction coenzyme metabolic process	1
GO:0006766	RCA	Gene Ontology	vitamin metabolic process	1
GO:0008652	RCA	Gene Ontology	cellular amino acid biosynthetic process	1
GO:0009072	RCA	Gene Ontology	aromatic amino acid family metabolic process	1
GO:0009106	RCA	Gene Ontology	lipoate metabolic process	1
GO:0009108	RCA	Gene Ontology	coenzyme biosynthetic process	1
GO:0009117	RCA	Gene Ontology	nucleotide metabolic process	1
GO:0009416	RCA	Gene Ontology	response to light stimulus	1
GO:0009695	RCA	Gene Ontology	jasmonic acid biosynthetic process	1
GO:0015994	RCA	Gene Ontology	chlorophyll metabolic process	1
GO:0015995	RCA	Gene Ontology	chlorophyll biosynthetic process	1
GO:0016117	RCA	Gene Ontology	carotenoid biosynthetic process	1
GO:0019216	RCA	Gene Ontology	regulation of lipid metabolic process	1
GO:0019288	RCA	Gene Ontology	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1
GO:0019684	RCA	Gene Ontology	photosynthesis, light reaction	1
GO:0019748	RCA	Gene Ontology	secondary metabolic process	1
GO:0031408	RCA	Gene Ontology	oxylipin biosynthetic process	1
GO:0035304	RCA	Gene Ontology	regulation of protein dephosphorylation	1
GO:0044272	RCA	Gene Ontology	sulfur compound biosynthetic process	1
GO:0006629	IEA	InterPro	lipid metabolic process

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0045485	IGI	Gene Ontology	omega-6 fatty acid desaturase activity	1
GO:0016491	IEA	UniProt	oxidoreductase activity	1 2 3 4

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0009507	IDA, ISM, NAS	Gene Ontology	chloroplast	1 2
GO:0009941	IDA	UniProt	chloroplast envelope	1 2 3 4 5
GO:0009706	IEA	UniProt	chloroplast inner membrane	1 2 3 4
GO:0016021	IEA	UniProt	integral to membrane	1 2 3 4

Color Legend

Computational Reviewed Evidence

Electronic Evidence

Experimental Evidence

InterPro	Description
IPR005804	Fatty acid desaturase, type 1

Mapman id	Description
11.2.4	lipid metabolism.FA desaturation.omega 6 desaturase

No SignalP domains detected for this gene.