Gene: AT4G28370 (Arabidopsis thaliana)

Overview

Gene Identifier
AT4G28370
Transcript Identifier
AT4G28370.1
Gene Type
Coding gene
Location
4 : 14035016-14039122 : positive

Family

Gene family
HOM03D006077
(22 genes in 13 species)
specific family
Subfamily
ORTHO03D003501
(18 genes in 13 species)
specific family

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Descriptions

Description
RING/U-box superfamily protein
Curated Summary
Encodes an E3 ubiquitin ligase that is involved in plant cell wall modification, seed mucilage extrusion, and controls the degree of pectin methylesterification in seed mucilage. It is located in the endomembrane system, likely localized in late endosome/multivesicular bodies/prevacular compartment. It has been shown to ubiquitinate proteins in conjunction with UBA1 and UBC8.
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Identifiers

Identifier Name
aliasFLYING SAUCER 1
aliasFLY1

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0009827IMPGene Ontologyplant-type cell wall modification1
GO:0048363IMPGene Ontologymucilage pectin metabolic process1
GO:0080001IMPGene Ontologymucilage extrusion from seed coat1

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0008270ISS, IEAGene Ontologyzinc ion binding
GO:0004842IDAGene Ontologyubiquitin-protein ligase activity1
GO:0005515IEAInterProprotein binding

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0012505IDAGene Ontologyendomembrane system1

Color Legend

Computational Reviewed Evidence
Electronic Evidence
Experimental Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR013083Zinc finger, RING/FYVE/PHD-type
IPR001841Zinc finger, RING-type
IPR011016Zinc finger, RING-CH-type
Mapman id Description
29.5.11.4.2protein.degradation.ubiquitin.E3.RING
SignalP Description
SignalP-TMSignal Peptide detected using TM network