Gene: AT4G16730 (Arabidopsis thaliana)

Overview

Gene Identifier
AT4G16730
Transcript Identifier
AT4G16730.1
Gene Type
Coding gene
Location
4 : 9403119-9406003 : positive

Family

Gene family
HOM03D000036
(1105 genes in 16 species)
specific family
Subfamily
ORTHO03D051501
(2 genes in 2 species)
specific family

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Descriptions

Description
terpene synthase 02
Curated Summary
In the Col ecotype, no functional protein is encoded at this locus due to the presence of a two-base (AT) insertion 184 nucleotides downstream of the start codon leading to a frame shift and premature translational termination. However, in the Ws ecotype, a functional terpene synthase that localizes to the chloroplast is encoded at this locus. It can catalyze the synthesis of (E)-beta-ocimene and (E,E)-alpha farnesene in vitro, but, it has more activity as an (E)-beta-ocimene synthase activity in vivo. This may reflect the greater availability of the GPP precursor of (E)-beta-ocimene than of the FPP precursor of (E,E)-alpha-farnesene in the chloroplasts where the Ws TPS02 is present.
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Identifiers

Identifier Name
aliasterpene synthase 02
aliasTPS02
uniprotP0CJ43

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0008152IEAInterPrometabolic process
GO:0016114IEAUniProtterpenoid biosynthetic process1 2 3 4
GO:0016106ISOPLAZA Tree-based Orthologysesquiterpenoid biosynthetic processAT4G16740
GO:0009625ISOPLAZA Tree-based Orthologyresponse to insectAT4G16740
GO:0043693ISOPLAZA Tree-based Orthologymonoterpene biosynthetic processAT3G25810
GO:0016099ISOPLAZA Tree-based Orthologymonoterpenoid biosynthetic processAT3G25820 AT3G25830 AT2G24210 SL01G105890
GO:0009753ISOPLAZA Tree-based Orthologyresponse to jasmonic acidMT4G045810 AT2G24210 AT4G16740
GO:0009611ISOPLAZA Tree-based Orthologyresponse to woundingLJ3G041280 MT4G045810 AT2G24210 AT4G16740
GO:0080027ISOPLAZA Tree-based Orthologyresponse to herbivoreLJ3G041280 MT4G045810 AT2G24210 AT4G16740

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0034768IDAGene Ontology(E)-beta-ocimene synthase activity1
GO:0052578IDAGene Ontologyalpha-farnesene synthase activity1
GO:0000287IEAUniProtmagnesium ion binding1 2 3 4
GO:0016829IEAInterProlyase activity
GO:0010333IEAUniProtterpene synthase activity1 2 3 4
GO:0005515ISOPLAZA Tree-based Orthologyprotein bindingAT3G25810
GO:0080015ISOPLAZA Tree-based Orthologysabinene synthase activityAT3G25810
GO:0050552ISOPLAZA Tree-based Orthology(4S)-limonene synthase activityAT3G25810
GO:0050550ISOPLAZA Tree-based Orthologypinene synthase activityAT3G25810
GO:0034002ISOPLAZA Tree-based Orthology(R)-limonene synthase activityAT3G25810
GO:0050551ISOPLAZA Tree-based Orthologymyrcene synthase activityAT3G25820 AT3G25830 AT3G25810 AT2G24210 AT4G16740
GO:0016835IEAPLAZA Homologycarbon-oxygen lyase activityHOM03D000055
GO:0043169IEAPLAZA Homologycation bindingHOM03D000055
GO:0016838IEAPLAZA Homologycarbon-oxygen lyase activity, acting on phosphatesHOM03D000055
GO:0043167IEAPLAZA Homologyion bindingHOM03D000055
GO:0003824IEAPLAZA Homologycatalytic activityHOM03D000055
GO:0046872IEAPLAZA Homologymetal ion bindingHOM03D000055

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0009507IEA, ISMUniProtchloroplast1 2 3 4
GO:0005829ISOPLAZA Tree-based OrthologycytosolAT4G16740
GO:0009570ISOPLAZA Tree-based Orthologychloroplast stromaMT4G045810

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Computational Reviewed Evidence
Electronic Evidence
Experimental Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR008930Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid
IPR001906Terpene synthase, N-terminal domain
IPR008949Terpenoid synthase
IPR005630Terpene synthase, metal-binding domain
Mapman id Description
16.1.5secondary metabolism.isoprenoids.terpenoids
No SignalP domains detected for this gene.