Gene: AT4G12620 (Arabidopsis thaliana)

Overview

Gene Identifier
AT4G12620
Transcript Identifier
AT4G12620.1
Gene Type
Coding gene
Location
4 : 7459812-7462253 : negative

Family

Gene family
HOM03D005459
(24 genes in 14 species)
specific family
Subfamily
ORTHO03D006242
(15 genes in 14 species)
specific family

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Descriptions

Description
origin of replication complex 1B
Curated Summary
Origin Recognition Complex subunit 1b. Involved in the initiation of DNA replication. Regulated transcriptionally during cell cycle, peaking at G1/S-phase. Target of E2F/DF family of transcription factors. Interacts with ORC2 and ORC5. Highly expressed in proliferating cells. Expression levels are independent of light regime.
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Identifiers

Identifier Name
aliasorigin of replication complex 1B
aliasORC1B
aliasATORC1B
aliasUNFERTILIZED EMBRYO SAC 13
aliasUNE13

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006260ISS, IEAGene OntologyDNA replication
GO:0009567IMPGene Ontologydouble fertilization forming a zygote and endosperm1
GO:0006355IMPGene Ontologyregulation of transcription, DNA-dependent1

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003677ISS, IEAGene OntologyDNA binding
GO:0005515IPI, IEAGene Ontologyprotein binding1
GO:0010385IDAGene Ontologydouble-stranded methylated DNA binding1
GO:0017111IEAInterPronucleoside-triphosphatase activity
GO:0000166IEAInterPronucleotide binding
GO:0008270IEAInterProzinc ion binding
GO:0005524IEAInterProATP binding

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634ISM, ISS, IEAGene Ontologynucleus
GO:0000808ISS, IEAGene Ontologyorigin recognition complex1

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Computational Reviewed Evidence
Electronic Evidence
Experimental Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR001025Bromo adjacent homology (BAH) domain
IPR011011Zinc finger, FYVE/PHD-type
IPR001965Zinc finger, PHD-type
IPR003959ATPase, AAA-type, core
IPR003593AAA+ ATPase domain
IPR019787Zinc finger, PHD-finger
IPR020793Origin recognition complex, subunit 1
IPR027417P-loop containing nucleoside triphosphate hydrolase
IPR013083Zinc finger, RING/FYVE/PHD-type
IPR019786Zinc finger, PHD-type, conserved site
Mapman id Description
28.1DNA.synthesis/chromatin structure
No SignalP domains detected for this gene.
DatabaseType
PlnTFDBPHD