PLAZA Gymnosperms gene overview : AT3G26560

Gene: AT3G26560 (Arabidopsis thaliana)

Overview

Gene Identifier: AT3G26560
Transcript Identifier: AT3G26560.1
Gene Type: Coding gene
Location: 3 : 9750122-9753719 : negative

Family

Gene family: HOM03D000084
(616 genes in 16 species)
specific family
Subfamily: ORTHO03D000108
(45 genes in 14 species)
specific family

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Descriptions

Description: ATP-dependent RNA helicase, putative

Identifiers

Identifier	Name
uniprot	Q38953

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0000226	RCA	Gene Ontology	microtubule cytoskeleton organization	1
GO:0000911	RCA	Gene Ontology	cytokinesis by cell plate formation	1
GO:0006486	RCA	Gene Ontology	protein glycosylation	1
GO:0006397	IEA	UniProt	mRNA processing	1 2 3 4 5
GO:0008380	IEA	UniProt	RNA splicing	1 2 3 4 5
GO:0035194	ISO	PLAZA Tree-based Orthology	posttranscriptional gene silencing by RNA	AT1G32490

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0003723	IEA, ISS	UniProt	RNA binding	1 2 3 4 5
GO:0004004	ISS	Gene Ontology	ATP-dependent RNA helicase activity
GO:0005524	IEA, ISS	UniProt	ATP binding	1 2 3 4 5
GO:0008026	IEA	UniProt	ATP-dependent helicase activity	1 2 3 4 5
GO:0004386	IEA	InterPro	helicase activity
GO:0003676	IEA	InterPro	nucleic acid binding
GO:0032555	IEA	PLAZA Homology	purine ribonucleotide binding	HOM03D000135
GO:0016817	IEA	PLAZA Homology	hydrolase activity, acting on acid anhydrides	HOM03D000135
GO:0043168	IEA	PLAZA Homology	anion binding	HOM03D000135
GO:0042623	IEA	PLAZA Homology	ATPase activity, coupled	HOM03D000135
GO:0032553	IEA	PLAZA Homology	ribonucleotide binding	HOM03D000135
GO:0035639	IEA	PLAZA Homology	purine ribonucleoside triphosphate binding	HOM03D000135
GO:0097367	IEA	PLAZA Homology	carbohydrate derivative binding	HOM03D000135
GO:0016818	IEA	PLAZA Homology	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	HOM03D000135
GO:0032559	IEA	PLAZA Homology	adenyl ribonucleotide binding	HOM03D000135
GO:1901265	IEA	PLAZA Homology	nucleoside phosphate binding	HOM03D000135
GO:0016462	IEA	PLAZA Homology	pyrophosphatase activity	HOM03D000135
GO:0000166	IEA	PLAZA Homology	nucleotide binding	HOM03D000135
GO:0030554	IEA	PLAZA Homology	adenyl nucleotide binding	HOM03D000135
GO:0001882	IEA	PLAZA Homology	nucleoside binding	HOM03D000135
GO:0017076	IEA	PLAZA Homology	purine nucleotide binding	HOM03D000135
GO:0016887	IEA	PLAZA Homology	ATPase activity	HOM03D000135
GO:0017111	IEA	PLAZA Homology	nucleoside-triphosphatase activity	HOM03D000135
GO:0036094	IEA	PLAZA Homology	small molecule binding	HOM03D000135
GO:0032549	IEA	PLAZA Homology	ribonucleoside binding	HOM03D000135
GO:0016787	IEA	PLAZA Homology	hydrolase activity	HOM03D000135
GO:0001883	IEA	PLAZA Homology	purine nucleoside binding	HOM03D000135
GO:0032550	IEA	PLAZA Homology	purine ribonucleoside binding	HOM03D000135
GO:0070035	IEA	PLAZA Homology	purine NTP-dependent helicase activity	HOM03D000135

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005634	IEA, ISM	UniProt	nucleus	1 2 3 4 5
GO:0005739	IDA	UniProt	mitochondrion	1 2 3 4 5 6
GO:0005829	IDA	UniProt	cytosol	1 2 3 4 5 6
GO:0009506	IDA	UniProt	plasmodesma	1 2 3 4 5 6
GO:0016020	ISO	PLAZA Tree-based Orthology	membrane	AT1G32490

Color Legend

Computational Reviewed Evidence

Electronic Evidence

Experimental Evidence

InterPro	Description
IPR001650	Helicase, C-terminal
IPR022967	RNA-binding domain, S1
IPR003029	Ribosomal protein S1, RNA-binding domain
IPR014001	Helicase, superfamily 1/2, ATP-binding domain
IPR011709	Domain of unknown function DUF1605
IPR027417	P-loop containing nucleoside triphosphate hydrolase
IPR012340	Nucleic acid-binding, OB-fold
IPR002464	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site
IPR011545	DNA/RNA helicase, DEAD/DEAH box type, N-terminal
IPR007502	Helicase-associated domain

Mapman id	Description
27.1	RNA.processing

No SignalP domains detected for this gene.