PLAZA Gymnosperms gene overview : AT3G22960

Gene: AT3G22960 (Arabidopsis thaliana)

Overview

Gene Identifier: AT3G22960
Transcript Identifier: AT3G22960.1
Gene Type: Coding gene
Location: 3 : 8139369-8141771 : positive

Family

Gene family: HOM03D000219
(276 genes in 16 species)
specific family
Subfamily: ORTHO03D000487
(27 genes in 15 species)
specific family

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Descriptions

Description: Pyruvate kinase family protein

Curated Summary: encodes a chloroplast pyruvate kinase alpha subunit. Important for seed oil biosynthesis. Ubiquitously expressed, with significantly increased expression in maturing seeds.

Identifiers

Identifier	Name
alias	PKP-ALPHA
alias	PKP1
alias	PLASTIDIAL PYRUVATE KINASE 1
uniprot	Q9LIK0

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006096	IEA, ISS	UniProt	glycolysis	1 2 3 4 5 6 7 8 9 10 11
GO:0046686	IEP	UniProt	response to cadmium ion	1 2 3 4 5 6 7 8 9 10 11 12
GO:0010431	IMP	UniProt	seed maturation	1 2 3 4 5 6 7 8 9 10 11 12
GO:0006629	IGI	UniProt	lipid metabolic process	1 2 3 4 5 6 7 8 9 10 11 12
GO:0009832	RCA	Gene Ontology	plant-type cell wall biogenesis	1
GO:0016049	RCA	Gene Ontology	cell growth	1
GO:0016126	RCA	Gene Ontology	sterol biosynthetic process	1
GO:0030243	RCA	Gene Ontology	cellulose metabolic process	1
GO:1901575	IEA	PLAZA Homology	organic substance catabolic process	HOM03D000273
GO:0044763	IEA	PLAZA Homology	single-organism cellular process	HOM03D000273
GO:0006091	IEA	PLAZA Homology	generation of precursor metabolites and energy	HOM03D000273
GO:0016052	IEA	PLAZA Homology	carbohydrate catabolic process	HOM03D000273
GO:0044710	IEA	PLAZA Homology	single-organism metabolic process	HOM03D000273
GO:0044712	IEA	PLAZA Homology	single-organism catabolic process	HOM03D000273
GO:0006007	IEA	PLAZA Homology	glucose catabolic process	HOM03D000273
GO:0006006	IEA	PLAZA Homology	glucose metabolic process	HOM03D000273
GO:0005996	IEA	PLAZA Homology	monosaccharide metabolic process	HOM03D000273
GO:0046365	IEA	PLAZA Homology	monosaccharide catabolic process	HOM03D000273
GO:0005975	IEA	PLAZA Homology	carbohydrate metabolic process	HOM03D000273
GO:0009056	IEA	PLAZA Homology	catabolic process	HOM03D000273
GO:0019318	IEA	PLAZA Homology	hexose metabolic process	HOM03D000273
GO:0044723	IEA	PLAZA Homology	single-organism carbohydrate metabolic process	HOM03D000273
GO:0044724	IEA	PLAZA Homology	single-organism carbohydrate catabolic process	HOM03D000273
GO:0019320	IEA	PLAZA Homology	hexose catabolic process	HOM03D000273

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0004743	IDA, ISSIEA,	UniProt	pyruvate kinase activity	1 2 3 4 5 6 7 8 9 10 11 12
GO:0000287	IDA, IEA,	UniProt	magnesium ion binding	1 2 3 4 5 6 7 8 9 10 11 12
GO:0030955	IDA, IEA,	UniProt	potassium ion binding	1 2 3 4 5 6 7 8 9 10 11 12
GO:0003824	IEA	InterPro	catalytic activity
GO:0005524	IEA	UniProt	ATP binding	1 2 3 4 5 6 7 8 9 10 11
GO:0043169	IEA	PLAZA Homology	cation binding	HOM03D000273
GO:0031420	IEA	PLAZA Homology	alkali metal ion binding	HOM03D000273
GO:0046872	IEA	PLAZA Homology	metal ion binding	HOM03D000273
GO:0016301	IEA	PLAZA Homology	kinase activity	HOM03D000273
GO:0016773	IEA	PLAZA Homology	phosphotransferase activity, alcohol group as acceptor	HOM03D000273
GO:0016772	IEA	PLAZA Homology	transferase activity, transferring phosphorus-containing groups	HOM03D000273
GO:0016740	IEA	PLAZA Homology	transferase activity	HOM03D000273

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0009507	IDA, ISM	Gene Ontology	chloroplast	1
GO:0009570	IDA	UniProt	chloroplast stroma	1 2 3 4 5 6 7 8 9 10 11 12
GO:0005829	RCA	Gene Ontology	cytosol	1

Color Legend

Computational Reviewed Evidence

Electronic Evidence

Experimental Evidence

InterPro	Description
IPR018209	Pyruvate kinase, active site
IPR001697	Pyruvate kinase
IPR015813	Pyruvate/Phosphoenolpyruvate kinase-like domain
IPR015806	Pyruvate kinase, beta-barrel insert domain
IPR015795	Pyruvate kinase, C-terminal
IPR011037	Pyruvate kinase-like, insert domain
IPR015794	Pyruvate kinase, alpha/beta
IPR015793	Pyruvate kinase, barrel

Mapman id	Description
4.2.14	glycolysis.plastid branch.pyruvate kinase (PK)

No SignalP domains detected for this gene.