Gene: AT2G40890 (Arabidopsis thaliana)

Overview

Gene Identifier
AT2G40890
Transcript Identifier
AT2G40890.1
Gene Type
Coding gene
Location
2 : 17058291-17060532 : negative

Family

Gene family
HOM03D000009
(3011 genes in 16 species)
specific family
Subfamily
ORTHO03D004813
(16 genes in 15 species)
specific family

Loading...please wait

Descriptions

Description
cytochrome P450, family 98, subfamily A, polypeptide 3
Curated Summary
encodes coumarate 3-hydroxylase (C3H), a P450-dependent monooxygenase. Involved in lignin biosynthesis and flavonoid biosynthesis. Also affects the biosynthesis of coumarins such as scopoletin and scopolin as a branching-out-pathway from the phenylpropanoid acid level.
Show more...

Identifiers

Identifier Name
aliascytochrome P450, family 98, subfamily A, polypeptide 3
aliasCYP98A3
uniprotO22203

Toolbox

Explore

View

 

Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0009699IMPGene Ontologyphenylpropanoid biosynthetic process1
GO:0009809IMP, TAS, UniProtlignin biosynthetic process1 2 3 4 5 6 7 8 9 10 11 12
GO:0009813IMPUniProtflavonoid biosynthetic process1 2 3 4 5 6 7 8 9 10 11
GO:0009805IMP, RCA, UniProtcoumarin biosynthetic process1 2 3 4 5 6 7 8 9 10 11 12
GO:0009611RCAGene Ontologyresponse to wounding1
GO:0009963RCAGene Ontologypositive regulation of flavonoid biosynthetic process1
GO:0055114IEAInterProoxidation-reduction process
GO:0044699IEAPLAZA Homologysingle-organism processHOM03D000004
GO:0044710IEAPLAZA Homologysingle-organism metabolic processHOM03D000004
GO:0008152IEAPLAZA Homologymetabolic processHOM03D000004

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0004497IDAGene Ontologymonooxygenase activity1
GO:0046409IDA, IMP, UniProtp-coumarate 3-hydroxylase activity1 2 3 4 5 6 7 8 9 10 11 12
GO:0005515IPIGene Ontologyprotein binding1
GO:0042802IPIGene Ontologyidentical protein binding1
GO:0005506IEAUniProtiron ion binding1 2 3 4 5 6 7 8 9 10
GO:0016705IEAUniProtoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen1 2 3 4 5 6 7 8 9 10
GO:0020037IEAUniProtheme binding1 2 3 4 5 6 7 8 9 10
GO:0043169IEAPLAZA Homologycation bindingHOM03D000004
GO:0043167IEAPLAZA Homologyion bindingHOM03D000004
GO:0046914IEAPLAZA Homologytransition metal ion bindingHOM03D000004
GO:0003824IEAPLAZA Homologycatalytic activityHOM03D000004
GO:0046906IEAPLAZA Homologytetrapyrrole bindingHOM03D000004
GO:0046872IEAPLAZA Homologymetal ion bindingHOM03D000004
GO:1901363IEAPLAZA Homologyheterocyclic compound bindingHOM03D000004
GO:0005488IEAPLAZA HomologybindingHOM03D000004
GO:0016491IEAPLAZA Homologyoxidoreductase activityHOM03D000004
GO:0097159IEAPLAZA Homologyorganic cyclic compound bindingHOM03D000004

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0043231IDAGene Ontologyintracellular membrane-bounded organelle1
GO:0005739IDAUniProtmitochondrion1 2 3 4 5 6 7 8 9 10 11
GO:0005783IDAUniProtendoplasmic reticulum1 2 3 4 5 6 7 8 9 10 11
GO:0005886IDAUniProtplasma membrane1 2 3 4 5 6 7 8 9 10 11
GO:0016021IEAUniProtintegral to membrane1 2 3 4 5 6 7 8 9 10

Color Legend

Computational Reviewed Evidence
Electronic Evidence
Experimental Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR002401Cytochrome P450, E-class, group I
IPR001128Cytochrome P450
IPR017972Cytochrome P450, conserved site
Mapman id Description
16.2.1.5secondary metabolism.phenylpropanoids.lignin biosynthesis.C3H
No SignalP domains detected for this gene.