PLAZA Gymnosperms gene overview : AT1G22760

Gene: AT1G22760 (Arabidopsis thaliana)

Overview

Gene Identifier: AT1G22760
Transcript Identifier: AT1G22760.1
Gene Type: Coding gene
Location: 1 : 8055599-8058799 : positive

Family

Gene family: HOM03D000251
(250 genes in 16 species)
specific family
Subfamily: ORTHO03D000170
(37 genes in 14 species)
specific family

Loading...please wait

Descriptions

Description: poly(A) binding protein 3

Curated Summary: Putative poly(A) binding protein May there fore function in posttranscriptional regulation, including mRNA turnover and translational initiation. Expression detected only in floral organs.

Show more...

Identifiers

Identifier	Name
alias	PAB3
alias	poly(A) binding protein 3
uniprot	O64380

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006397	IGI	UniProt	mRNA processing	1 2 3 4 5 6 7 8 9 10
GO:0060211	IDA	UniProt	regulation of nuclear-transcribed mRNA poly(A) tail shortening	1 2 3 4 5 6 7 8 9 10
GO:0000184	IEA	UniProt	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	1 2 3 4 5 6 7 8 9
GO:0006417	IEA	UniProt	regulation of translation	1 2 3 4 5 6 7 8 9
GO:0006413	ISO	PLAZA Tree-based Orthology	translational initiation	AT1G71770

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0003723	IEA, ISS	UniProt	RNA binding	1 2 3 4 5 6 7 8 9
GO:0003743	ISS	Gene Ontology	translation initiation factor activity
GO:0000166	IEA	UniProt	nucleotide binding	1 2 3 4 5 6 7 8 9
GO:0003676	IEA	InterPro	nucleic acid binding
GO:0008143	ISO	PLAZA Tree-based Orthology	poly(A) RNA binding	AT1G71770
GO:1901265	IEA	PLAZA Homology	nucleoside phosphate binding	HOM03D000173
GO:1901363	IEA	PLAZA Homology	heterocyclic compound binding	HOM03D000173
GO:0036094	IEA	PLAZA Homology	small molecule binding	HOM03D000173
GO:0097159	IEA	PLAZA Homology	organic cyclic compound binding	HOM03D000173

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005737	IEA	UniProt	cytoplasm	1 2 3 4 5 6 7 8 9
GO:0005634	IEA	UniProt	nucleus	1 2 3 4 5 6 7 8 9
GO:0005829	ISO	PLAZA Tree-based Orthology	cytosol	AT1G71770

Color Legend

Computational Reviewed Evidence

Electronic Evidence

Experimental Evidence

InterPro	Description
IPR006515	Polyadenylate binding protein, human types 1, 2, 3, 4
IPR012677	Nucleotide-binding, alpha-beta plait
IPR000504	RNA recognition motif domain
IPR002004	Polyadenylate-binding protein/Hyperplastic disc protein
IPR003954	RNA recognition motif domain, eukaryote

Mapman id	Description
27.1	RNA.processing

No SignalP domains detected for this gene.