PLAZA Gymnosperms gene overview : AT1G19120

Gene: AT1G19120 (Arabidopsis thaliana)

Overview

Gene Identifier: AT1G19120
Transcript Identifier: AT1G19120.1
Gene Type: Coding gene
Location: 1 : 6608288-6609162 : positive

Family

Gene family: HOM03D003524
(35 genes in 16 species)
specific family
Subfamily: ORTHO03D004817
(16 genes in 14 species)
specific family

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Descriptions

Description: Small nuclear ribonucleoprotein family protein

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Identifiers

Identifier	Name
alias	SM-like 1A
alias	LSM1A

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0010228	RCA	Gene Ontology	vegetative to reproductive phase transition of meristem	1
GO:0016070	IGI	Gene Ontology	RNA metabolic process	1

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0005515	IPI	Gene Ontology	protein binding	1
GO:0000339	IEA	PLAZA Homology	RNA cap binding	HOM03D002967

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005634	ISM, ISS	Gene Ontology	nucleus
GO:0005732	ISS	Gene Ontology	small nucleolar ribonucleoprotein complex
GO:0000932	IDA	Gene Ontology	cytoplasmic mRNA processing body	1

Color Legend

Computational Reviewed Evidence

Electronic Evidence

Experimental Evidence

InterPro	Description
IPR010920	Like-Sm (LSM) domain
IPR001163	Ribonucleoprotein LSM domain
IPR006649	Ribonucleoprotein LSM domain, eukaryotic/archaea-type

Mapman id	Description
27.1	RNA.processing

No SignalP domains detected for this gene.