PLAZA Gymnosperms gene overview : AT1G14650

Gene: AT1G14650 (Arabidopsis thaliana)

Overview

Gene Identifier: AT1G14650
Transcript Identifier: AT1G14650.1
Gene Type: Coding gene
Location: 1 : 5028077-5030520 : positive

Family

Gene family: HOM03D002555
(45 genes in 16 species)
specific family
Subfamily: ORTHO03D002618
(19 genes in 16 species)
specific family

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Descriptions

Description: SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein

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Identifiers

Identifier	Name
uniprot	Q8RXF1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006396	ISS, IEA	Gene Ontology	RNA processing
GO:0000398	ISS	UniProt	mRNA splicing, via spliceosome	1 2

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0003723	ISS, IEA,	UniProt	RNA binding	1 2
GO:0005515	IEA	InterPro	protein binding

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005634	ISM	Gene Ontology	nucleus
GO:0005684	ISS	UniProt	U2-type spliceosomal complex	1 2

Color Legend

Computational Reviewed Evidence

Electronic Evidence

Experimental Evidence

InterPro	Description
IPR000061	SWAP/Surp
IPR000626	Ubiquitin domain
IPR022030	Pre-mRNA splicing factor PRP21-like protein

Mapman id	Description
27.1	RNA.processing

No SignalP domains detected for this gene.