Gene: AT1G14420 (Arabidopsis thaliana)

Overview

Gene Identifier
AT1G14420
Transcript Identifier
AT1G14420.1
Gene Type
Coding gene
Location
1 : 4931844-4933405 : negative

Family

Gene family
HOM03D000103
(535 genes in 16 species)
specific family
Subfamily
ORTHO03D050086
(2 genes in 2 species)
specific family

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Descriptions

Description
Pectate lyase family protein
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Identifiers

Identifier Name
aliasAT59
uniprotQ9M9S2

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0009827RCAGene Ontologyplant-type cell wall modification1
GO:0009664TASUniProtplant-type cell wall organization1 2 3 4
GO:0045490IEAUniProtpectin catabolic process1 2 3

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0016829ISSGene Ontologylyase activity
GO:0030570ISS, IEA, UniProtpectate lyase activity1 2 3
GO:0046872IEAUniProtmetal ion binding1 2 3
GO:0016837IEAPLAZA Homologycarbon-oxygen lyase activity, acting on polysaccharidesHOM03D000139

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005576ISMGene Ontologyextracellular region

Color Legend

Computational Reviewed Evidence
Electronic Evidence
Experimental Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR018082AmbAllergen
IPR007524Pectate lyase, N-terminal
IPR002022Pectate lyase/Amb allergen
IPR011050Pectin lyase fold/virulence factor
IPR012334Pectin lyase fold
Mapman id Description
10.6.3cell wall.degradation.pectate lyases and polygalacturonases
SignalP Description
SignalP-noTMSignal Peptide detected using noTM network