PLAZA Gymnosperms gene overview : AT1G09760

Gene: AT1G09760 (Arabidopsis thaliana)

Overview

Gene Identifier: AT1G09760
Transcript Identifier: AT1G09760.1
Gene Type: Coding gene
Location: 1 : 3159476-3161603 : negative

Family

Gene family: HOM03D005095
(26 genes in 16 species)
specific family
Subfamily: ORTHO03D002127
(20 genes in 16 species)
specific family

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Descriptions

Description: U2 small nuclear ribonucleoprotein A

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Identifiers

Identifier	Name
alias	U2 small nuclear ribonucleoprotein A
alias	U2A'
uniprot	P43333

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...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0009409	IEP	UniProt	response to cold	1 2 3 4
GO:0000398	IDA, RCA,	UniProt	mRNA splicing, via spliceosome	1 2 3 4 5
GO:0001510	RCA	Gene Ontology	RNA methylation	1

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0003723	IEA	UniProt	RNA binding	1 2 3
GO:0005515	IEA	PLAZA Homology	protein binding	HOM03D004508

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005634	IDA, ISM	Gene Ontology	nucleus	1
GO:0009507	IDA	UniProt	chloroplast	1 2 3 4
GO:0005654	IDA	Gene Ontology	nucleoplasm	1
GO:0005737	IDA	Gene Ontology	cytoplasm	1
GO:0015030	IDA	UniProt	Cajal body	1 2 3 4
GO:0005730	IDA	UniProt	nucleolus	1 2 3 4
GO:0005829	IDA	UniProt	cytosol	1 2 3 4
GO:0030529	IEA	UniProt	ribonucleoprotein complex	1 2 3

Color Legend

Computational Reviewed Evidence

Electronic Evidence

Experimental Evidence

InterPro	Description
IPR003603	U2A'/phosphoprotein 32 family A, C-terminal

Mapman id	Description
27.1	RNA.processing

No SignalP domains detected for this gene.