Tree Explorer: HOM03D008533  

Basic species colored phylogenetic tree with speciation/duplication information.
The stripped multiple sequence alignment used to infer the phylogenetic tree is only 111 amino acids long


Tree view

Archaeopteryx/Forester requires at least Java 1.5 To determine which version of Java your web browser is using, please visit javatester


Node color
Green nodes indicate speciation events, red nodes indicate duplication events
Consistency score
When a duplication node is selected, you can find the consistency score via Properties => Duplication consistency score. Low consistency scores indicate that the tree reconciliation classified this node incorrectly as a duplication event to cope with an inconsistency between the gene tree and the species tree topology.
note: if exported to phyloXML these values are included, which can cause problems with some third-party tree viewers. Please try exporting to other formats (eg. Newick) if problems occur. Alternatively the tree with associated protein domains or gene structure can be exported as phyloXML.


Download Newick Download PhyloXML

Multiple Sequence Alignment information

View alignment of the entire gene family
Stripped length
View edited alignment used for tree construction

Outlier/stripped gene information

Gene id Status Cause
TBA00022138 removed partial
PME00087143 removed outlier