Tree Explorer: HOM03D008533  

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Basic species colored phylogenetic tree with speciation/duplication information.
Warning
The stripped multiple sequence alignment used to infer the phylogenetic tree is only 111 amino acids long

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Tree view



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Legend

Node color
Green nodes indicate speciation events, red nodes indicate duplication events
Consistency score
When a duplication node is selected, you can find the consistency score via Properties => Duplication consistency score. Low consistency scores indicate that the tree reconciliation classified this node incorrectly as a duplication event to cope with an inconsistency between the gene tree and the species tree topology.
note: if exported to phyloXML these values are included, which can cause problems with some third-party tree viewers. Please try exporting to other formats (eg. Newick) if problems occur. Alternatively the tree with associated protein domains or gene structure can be exported as phyloXML.

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Multiple Sequence Alignment information

Method
muscle
Length
255
View alignment of the entire gene family
Stripped length
111
View edited alignment used for tree construction

Outlier/stripped gene information

Gene id Status Cause
TBA00022138 removed partial
PME00087143 removed outlier