Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
WorkbenchGene family expansion analysis 
Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.
- Gene family
- HOM03D000954
- Gene count gene family
- 96
- Total coding gene count
- 755,505
- Keywords
-
Organisms
| Organism | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
|---|---|---|---|---|---|
| Picea glauca | 28,909 | 6 | 3.83% | 6.25% | 1.63 |
| Picea abies | 66,632 | 10 | 8.82% | 10.42% | 1.18 |
| Picea sitchensis | 20,434 | 8 | 2.7% | 8.33% | 3.09 |
| Pinus pinaster | 76,426 | 10 | 10.12% | 10.42% | 1.03 |
| Pinus sylvestris | 36,106 | 4 | 4.78% | 4.17% | 0.87 |
| Pinus taeda | 84,446 | 9 | 11.18% | 9.38% | 0.84 |
| Pseudotsuga menziesii | 149,717 | 11 | 19.82% | 11.46% | 0.58 |
| Gnetum montanum | 32,549 | 3 | 4.31% | 3.13% | 0.73 |
| Taxus baccata | 32,062 | 3 | 4.24% | 3.13% | 0.74 |
| Cycas micholitzii | 28,901 | 5 | 3.83% | 5.21% | 1.36 |
| Ginkgo biloba | 30,404 | 4 | 4.02% | 4.17% | 1.04 |
| Populus trichocarpa | 41,434 | 5 | 5.48% | 5.21% | 0.95 |
| Arabidopsis thaliana | 27,416 | 5 | 3.63% | 5.21% | 1.44 |
| Oryza sativa ssp. japonica | 40,738 | 5 | 5.39% | 5.21% | 0.97 |
| Amborella trichopoda | 26,931 | 3 | 3.56% | 3.13% | 0.88 |
| Physcomitrella patens | 32,400 | 5 | 4.29% | 5.21% | 1.21 |
Phylogenetic clades
| Clade | Num species | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
|---|---|---|---|---|---|---|
| Picea | 3 | 115,975 | 24 | 15.35% | 25% | 1.63 |
| Pinus | 3 | 196,978 | 23 | 26.07% | 23.96% | 0.92 |
| Pinaceae | 7 | 462,670 | 58 | 61.24% | 60.42% | 0.99 |
| Gymnosperms | 11 | 586,586 | 73 | 77.64% | 76.04% | 0.98 |
| Angiosperms | 4 | 136,519 | 18 | 18.07% | 18.75% | 1.04 |
| Embryophyta | 16 | 755,505 | 96 | 100% | 100% | 1 |