Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
WorkbenchGene family expansion analysis 
Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.
- Gene family
- HOM03D000219
- Gene count gene family
- 276
- Total coding gene count
- 755,505
- Keywords
-
Organisms
| Organism | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
|---|---|---|---|---|---|
| Picea glauca | 28,909 | 12 | 3.83% | 4.35% | 1.14 |
| Picea abies | 66,632 | 28 | 8.82% | 10.14% | 1.15 |
| Picea sitchensis | 20,434 | 16 | 2.7% | 5.8% | 2.15 |
| Pinus pinaster | 76,426 | 25 | 10.12% | 9.06% | 0.9 |
| Pinus sylvestris | 36,106 | 15 | 4.78% | 5.43% | 1.14 |
| Pinus taeda | 84,446 | 28 | 11.18% | 10.14% | 0.91 |
| Pseudotsuga menziesii | 149,717 | 21 | 19.82% | 7.61% | 0.38 |
| Gnetum montanum | 32,549 | 12 | 4.31% | 4.35% | 1.01 |
| Taxus baccata | 32,062 | 14 | 4.24% | 5.07% | 1.2 |
| Cycas micholitzii | 28,901 | 16 | 3.83% | 5.8% | 1.51 |
| Ginkgo biloba | 30,404 | 20 | 4.02% | 7.25% | 1.8 |
| Populus trichocarpa | 41,434 | 18 | 5.48% | 6.52% | 1.19 |
| Arabidopsis thaliana | 27,416 | 13 | 3.63% | 4.71% | 1.3 |
| Oryza sativa ssp. japonica | 40,738 | 10 | 5.39% | 3.62% | 0.67 |
| Amborella trichopoda | 26,931 | 9 | 3.56% | 3.26% | 0.92 |
| Physcomitrella patens | 32,400 | 19 | 4.29% | 6.88% | 1.6 |
Phylogenetic clades
| Clade | Num species | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
|---|---|---|---|---|---|---|
| Picea | 3 | 115,975 | 56 | 15.35% | 20.29% | 1.32 |
| Pinus | 3 | 196,978 | 68 | 26.07% | 24.64% | 0.95 |
| Pinaceae | 7 | 462,670 | 145 | 61.24% | 52.54% | 0.86 |
| Gymnosperms | 11 | 586,586 | 207 | 77.64% | 75% | 0.97 |
| Angiosperms | 4 | 136,519 | 50 | 18.07% | 18.12% | 1 |
| Embryophyta | 16 | 755,505 | 276 | 100% | 100% | 1 |