Gene: Zjn_sc00051.1.g01590.1.am.mkhc
General Information
Structural Information
- Species Zoysia japonica ssp. nagirizaki
- Gene Identifier Zjn_sc00051.1.g01590.1.am.mkhc
- Transcript Identifier Zjn_sc00051.1.g01590.1.am.mkhc
- Gene Type Coding gene
- Location Zjn_sc00051.1 : 1118873-1125982 : positive
Gene Family Information
- ID HOM05M002156
- #Genes/#Species 168/53
- Phylogenetic origin
- ID ORTHO05M004941
- #Genes/#Species 94/53
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
Descriptions
- Loading (ortholog descriptions from zma)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006396 | IEA | InterPro | RNA processing | |
| GO:0006402 | IEA | InterPro | mRNA catabolic process | |
| GO:0015995 | ISO | PLAZA Integrative Orthology | chlorophyll biosynthetic process | AT3G03710 |
| GO:0016120 | ISO | PLAZA Integrative Orthology | carotene biosynthetic process | AT3G03710 |
| GO:0016123 | ISO | PLAZA Integrative Orthology | xanthophyll biosynthetic process | AT3G03710 |
| GO:0016036 | ISO | PLAZA Integrative Orthology | cellular response to phosphate starvation | AT3G03710 |
| GO:0031425 | ISO | PLAZA Integrative Orthology | chloroplast RNA processing | AT3G03710 |
| GO:0010323 | ISO | PLAZA Integrative Orthology | negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | AT3G03710 |
| GO:0006401 | ISO | PLAZA Integrative Orthology | RNA catabolic process | AT3G03710 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003723 | IEA | InterPro | RNA binding | |
| GO:0004654 | IEA | InterPro | polyribonucleotide nucleotidyltransferase activity | |
| GO:0003676 | ISO | PLAZA Homology (enrichment) | nucleic acid binding | HOM05M002156 |
| GO:0000175 | ISO | PLAZA Integrative Orthology | 3'-5'-exoribonuclease activity | AT3G03710 |
| GO:0003729 | ISO | PLAZA Integrative Orthology | mRNA binding | AT3G03710 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009570 | ISO | PLAZA Integrative Orthology | chloroplast stroma | AT3G03710 |
| GO:0009507 | ISO | PLAZA Integrative Orthology | chloroplast | AT3G03710 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR027408 | PNPase/RNase PH domain superfamily |
| IPR020568 | Ribosomal protein S5 domain 2-type fold |
| IPR036345 | Exoribonuclease, PH domain 2 superfamily |
| IPR036456 | Polyribonucleotide nucleotidyltransferase, RNA-binding domain superfamily |
| IPR012162 | Polyribonucleotide nucleotidyltransferase |
| IPR015847 | Exoribonuclease, phosphorolytic domain 2 |
| Mapman id | Description |
|---|---|
| 16.11.1.1 | RNA processing.organelle machinery.ribonuclease activities.polynucleotide phosphorylase (PNP) |