Gene: Solyc12g096000.2

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc12g096000.2
  • Transcript Identifier Solyc12g096000.2.1
  • Gene Type Coding gene
  • Location SL4.0ch12 : 64604308-64606947 : negative

Gene Family Information

  • ID HOM05M000030
  • #Genes/#Species 4096/53
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc12g096000.2.1
  • uniprot A0A3Q7JED9

Descriptions

  • Description RNA helicase DEAD41
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0046686
ISO
PLAZA Integrative Orthologyresponse to cadmium ion AT1G54270
GO:0016070
IDA
Gene OntologyRNA metabolic process1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003724
IBA
IEA
GOA DatabaseRNA helicase activity
GO:0003724
ISS
Gene OntologyRNA helicase activity1
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT3G13920
GO:0003729
IBA
GOA DatabasemRNA binding
GO:0003723
IBA
GOA DatabaseRNA binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0004386
IEA
GOA Databasehelicase activity
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0000166
IEA
GOA Databasenucleotide binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005886
ISO
PLAZA Integrative Orthologyplasma membrane AT1G54270
GO:0005774
ISO
PLAZA Integrative Orthologyvacuolar membrane AT1G72730
GO:0009505
ISO
PLAZA Integrative Orthologyplant-type cell wall AT1G72730
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT1G72730
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm Os02g0146600
GO:0009506
ISO
PLAZA Integrative Orthologyplasmodesma AT1G54270
GO:0005634
ISO
PLAZA Integrative Orthologynucleus Os02g0146600
GO:0005730
IBA
GOA Databasenucleolus
GO:0071013
IBA
GOA Databasecatalytic step 2 spliceosome

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001650 Helicase, C-terminal
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR011545 DEAD/DEAH box helicase domain
Mapman id Description
17.4.2.1 Protein biosynthesis.translation initiation.mRNA loading.mRNA unwinding factor (eIF4A)