Gene: Solyc03g025540.3

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc03g025540.3
  • Transcript Identifier Solyc03g025540.3.1
  • Gene Type Coding gene
  • Location SL4.0ch03 : 2898852-2917620 : negative

Gene Family Information

  • ID HOM05M000903
  • #Genes/#Species 363/53
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc03g025540.3.1
  • uniprot A0A3Q7FES3

Descriptions

  • Description Cleavage and polyadenylation specificity factor subunit 2 (AHRD V3.3 *** A0A1U8FZM0_CAPAN)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0035194
ISO
PLAZA Integrative Orthologypost-transcriptional gene silencing by RNA AT5G23880
GO:0006629
ISO
PLAZA Homology (enrichment)lipid metabolic process HOM05M000903
GO:0016042
ISO
PLAZA Homology (enrichment)lipid catabolic process HOM05M000903
GO:0006398
IBA
GOA DatabasemRNA 3'-end processing by stem-loop binding and cleavage
GO:0006378
IBA
IEA
GOA DatabasemRNA polyadenylation
GO:0006378
IEA
InterPromRNA polyadenylation
GO:0098789
IBA
GOA Databasepre-mRNA cleavage required for polyadenylation
GO:0006379
IEA
GOA DatabasemRNA cleavage
GO:0006379
IEA
InterPromRNA cleavage
GO:0006397
IEA
GOA DatabasemRNA processing

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT5G23880
GO:0003677
ISO
PLAZA Integrative OrthologyDNA binding AT5G23880
GO:0003723
IBA
IEA
GOA DatabaseRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005847
IBA
IEA
GOA DatabasemRNA cleavage and polyadenylation specificity factor complex
GO:0005847
IEA
InterPromRNA cleavage and polyadenylation specificity factor complex
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT5G23880
GO:0009506
ISO
PLAZA Integrative Orthologyplasmodesma AT5G23880
GO:0005634
IEA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR027075 Cleavage and polyadenylation specificity factor subunit 2
IPR001279 Metallo-beta-lactamase
IPR022712 Beta-Casp domain
IPR025069 Cleavage and polyadenylation specificity factor 2, C-terminal
IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like
IPR011108 Zn-dependent metallo-hydrolase, RNA specificity domain
IPR035639 CPSF2, metallo-hydrolase domain
Mapman id Description
16.3.1.2.2 RNA processing.RNA 3'-end processing.mRNA polyadenylation.Cleavage and Polyadenylation Specificity Factor (CPSF) complex.component CPSF100/Ydh1