Functional clusters
Information
- Type InterPro
- Description ABC transporter C family, six-transmembrane helical domain 2
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Anthoceros agrestis | Sc2ySwM_117 | 5 | CH_aag_152 | 3 | 4 | 0.0000140628 |
| Allium sativum | chr6 | 5 | CH_asa_565 | 3 | 3 | 0.00000126158 |
| Arabidopsis thaliana | Chr3 | 5 | CH_ath_276 | 3 | 4 | 0.0000014083 |
| Brachypodium distachyon | Bd1 | 5 | CH_bdi_320 | 3 | 4 | 0.0000155107 |
| Chara braunii | BFEA01000150 | 5 | CH_cbr_299 | 2 | 2 | 0.000431562 |
| Cenchrus purpureus | GWHAORA00000006 | 5 | CH_cpu_852 | 4 | 10 | 0.00000152683 |
| Elaeis guineensis | EG5.1_Chr3 | 5 | CH_egu_182 | 3 | 3 | 0.00000296166 |
| Hordeum vulgare | chr3H | 5 | CH_hvu_512 | 3 | 5 | 0.0000328395 |
| Lolium perenne | Lp_chr3_0 | 5 | CH_lpe_161 | 5 | 14 | 0.00000000105151 |
| Lolium perenne | Lp_chr2_0 | 5 | CH_lpe_457 | 3 | 5 | 0.0000402694 |
| Marchantia polymorpha | scaffold_32 | 5 | CH_mpo_131 | 3 | 5 | 0.0000522811 |
| Populus trichocarpa | scaffold_67 | 5 | CH_ptr_486 | 3 | 3 | 0.0000183118 |
| Populus trichocarpa | Chr03 | 5 | CH_ptr_487 | 3 | 3 | 0.0000183118 |
| Secale cereale | GWHASIY00000004 | 5 | CH_sce_81 | 8 | 23 | 2.67158e-16 |
| Sequoiadendron giganteum | chr3 | 5 | CH_sgi_284 | 8 | 21 | 6.48846e-17 |
| Setaria italica | scaffold_7 | 5 | CH_sit_420 | 5 | 48 | 0.00000166864 |
| Saccharum spontaneum | Chr8A | 5 | CH_ssp_1154 | 3 | 4 | 0.0000391962 |
| Setaria viridis | Chr_07 | 5 | CH_svi_451 | 5 | 59 | 0.00000317957 |
| Triticum aestivum | Chr7B | 5 | CH_tae_123 | 11 | 30 | 1.33975e-22 |
| Triticum dicoccoides | 2B | 5 | CH_tdi_794 | 3 | 4 | 0.0000345925 |
| Triticum turgidum | chr7B | 5 | CH_ttu_327 | 6 | 31 | 0.000000000952336 |
| Anthoceros agrestis | Sc2ySwM_117 | 6 | CH_aag_152 | 3 | 4 | 0.0000140628 |
| Allium sativum | chr6 | 6 | CH_asa_565 | 3 | 3 | 0.00000126158 |
| Arabidopsis thaliana | Chr3 | 6 | CH_ath_276 | 3 | 4 | 0.0000014083 |
| Brachypodium distachyon | Bd1 | 6 | CH_bdi_320 | 3 | 4 | 0.0000155107 |
| Chara braunii | BFEA01000150 | 6 | CH_cbr_299 | 2 | 2 | 0.000431562 |
| Cenchrus purpureus | GWHAORA00000006 | 6 | CH_cpu_852 | 4 | 10 | 0.00000152683 |
| Elaeis guineensis | EG5.1_Chr3 | 6 | CH_egu_182 | 3 | 3 | 0.00000296166 |
| Hordeum vulgare | chr3H | 6 | CH_hvu_512 | 3 | 5 | 0.0000328395 |
| Lolium perenne | Lp_chr3_0 | 6 | CH_lpe_161 | 5 | 14 | 0.00000000105151 |
| Lolium perenne | Lp_chr2_0 | 6 | CH_lpe_457 | 3 | 5 | 0.0000402694 |
| Marchantia polymorpha | scaffold_32 | 6 | CH_mpo_131 | 3 | 5 | 0.0000522811 |
| Populus trichocarpa | scaffold_67 | 6 | CH_ptr_486 | 3 | 3 | 0.0000183118 |
| Populus trichocarpa | Chr03 | 6 | CH_ptr_487 | 3 | 3 | 0.0000183118 |
| Secale cereale | GWHASIY00000004 | 6 | CH_sce_81 | 8 | 23 | 2.67158e-16 |
| Sequoiadendron giganteum | chr3 | 6 | CH_sgi_284 | 8 | 21 | 6.48846e-17 |
| Setaria italica | scaffold_7 | 6 | CH_sit_420 | 5 | 48 | 0.00000166864 |
| Saccharum spontaneum | Chr8A | 6 | CH_ssp_1154 | 3 | 4 | 0.0000391962 |
| Setaria viridis | Chr_07 | 6 | CH_svi_451 | 5 | 59 | 0.00000317957 |
| Triticum aestivum | Chr7B | 6 | CH_tae_123 | 11 | 30 | 1.33975e-22 |
| Triticum dicoccoides | 2B | 6 | CH_tdi_794 | 3 | 4 | 0.0000345925 |
| Triticum turgidum | chr7B | 6 | CH_ttu_327 | 6 | 31 | 0.000000000952336 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |