Functional clusters
Information
- Type InterPro
- Description ABC-2 type transporter
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Asparagus officinalis | AsparagusV1_08 | 5 | CH_aof_51 | 5 | 10 | 0.0000000840472 |
| Allium sativum | chr5 | 5 | CH_asa_401 | 5 | 10 | 0.0000000552096 |
| Allium sativum | chr6 | 5 | CH_asa_402 | 5 | 10 | 0.0000000552096 |
| Arabidopsis thaliana | Chr3 | 5 | CH_ath_227 | 4 | 7 | 0.000000202836 |
| Amborella trichopoda | AmTr_v1.0_scaffold00069 | 5 | CH_atr_250 | 4 | 5 | 0.000000554537 |
| Cenchrus purpureus | GWHAORA00000007 | 5 | CH_cpu_1561 | 3 | 3 | 0.00046661 |
| Cenchrus purpureus | GWHAORA00000007 | 5 | CH_cpu_377 | 6 | 9 | 0.000000000261588 |
| Digitaria exilis | Dexi_CM05836_chr05B | 5 | CH_dex_148 | 7 | 8 | 0.00000000000000471226 |
| Digitaria exilis | Dexi_CM05836_chr05A | 5 | CH_dex_163 | 8 | 17 | 0.0000000000000187278 |
| Eragrostis curvula | 3 | 5 | CH_ecu_1121 | 4 | 12 | 0.0000618983 |
| Magnolia biondii | Chr05 | 5 | CH_mbi_1052 | 3 | 4 | 0.000294458 |
| Marchantia polymorpha | scaffold_109 | 5 | CH_mpo_199 | 3 | 4 | 0.000398801 |
| Miscanthus sinensis | Chr10 | 5 | CH_msi_573 | 4 | 7 | 0.0000081472 |
| Miscanthus sinensis | Chr06 | 5 | CH_msi_574 | 4 | 7 | 0.0000081472 |
| Oryza alta | GWHAZTO00000024 | 5 | CH_oal_1606 | 3 | 4 | 0.00055486 |
| Oryza alta | GWHAZTO00000021 | 5 | CH_oal_1607 | 3 | 4 | 0.00055486 |
| Oryza alta | GWHAZTO00000001 | 5 | CH_oal_548 | 5 | 13 | 0.000000211995 |
| Oryza alta | GWHAZTO00000013 | 5 | CH_oal_977 | 4 | 11 | 0.000050007 |
| Oryza sativa ssp. indica | Chr9 | 5 | CH_osaindica_356 | 4 | 7 | 0.00000305876 |
| Phyllostachys edulis | hic_scaffold_9 | 5 | CH_ped_977 | 3 | 4 | 0.000982639 |
| Sequoiadendron giganteum | chr8 | 5 | CH_sgi_317 | 8 | 11 | 7.09207e-16 |
| Selaginella moellendorffii | scaffold_69 | 5 | CH_smo_296 | 3 | 3 | 0.000382655 |
| Selaginella moellendorffii | scaffold_42 | 5 | CH_smo_72 | 6 | 15 | 0.0000000284733 |
| Spirodela polyrhiza | pseudo12 | 5 | CH_spo_210 | 4 | 11 | 0.0000853375 |
| Spirodela polyrhiza | pseudo5 | 5 | CH_spo_377 | 3 | 4 | 0.000568828 |
| Saccharum spontaneum | Chr6A | 5 | CH_ssp_1915 | 3 | 3 | 0.000540261 |
| Triticum dicoccoides | 7B | 5 | CH_tdi_1050 | 3 | 3 | 0.000285276 |
| Triticum dicoccoides | 5B | 5 | CH_tdi_170 | 6 | 6 | 0.00000000000111103 |
| Asparagus officinalis | AsparagusV1_08 | 6 | CH_aof_51 | 5 | 10 | 0.0000000840472 |
| Allium sativum | chr5 | 6 | CH_asa_401 | 5 | 10 | 0.0000000552096 |
| Allium sativum | chr6 | 6 | CH_asa_402 | 5 | 10 | 0.0000000552096 |
| Arabidopsis thaliana | Chr3 | 6 | CH_ath_227 | 4 | 7 | 0.000000202836 |
| Amborella trichopoda | AmTr_v1.0_scaffold00069 | 6 | CH_atr_250 | 4 | 5 | 0.000000554537 |
| Cenchrus purpureus | GWHAORA00000007 | 6 | CH_cpu_1561 | 3 | 3 | 0.00046661 |
| Cenchrus purpureus | GWHAORA00000007 | 6 | CH_cpu_377 | 6 | 9 | 0.000000000261588 |
| Digitaria exilis | Dexi_CM05836_chr05B | 6 | CH_dex_148 | 7 | 8 | 0.00000000000000471226 |
| Digitaria exilis | Dexi_CM05836_chr05A | 6 | CH_dex_163 | 8 | 17 | 0.0000000000000187278 |
| Eragrostis curvula | 3 | 6 | CH_ecu_1121 | 4 | 12 | 0.0000618983 |
| Magnolia biondii | Chr05 | 6 | CH_mbi_1052 | 3 | 4 | 0.000294458 |
| Marchantia polymorpha | scaffold_109 | 6 | CH_mpo_199 | 3 | 4 | 0.000398801 |
| Miscanthus sinensis | Chr10 | 6 | CH_msi_573 | 4 | 7 | 0.0000081472 |
| Miscanthus sinensis | Chr06 | 6 | CH_msi_574 | 4 | 7 | 0.0000081472 |
| Oryza alta | GWHAZTO00000024 | 6 | CH_oal_1606 | 3 | 4 | 0.00055486 |
| Oryza alta | GWHAZTO00000021 | 6 | CH_oal_1607 | 3 | 4 | 0.00055486 |
| Oryza alta | GWHAZTO00000001 | 6 | CH_oal_548 | 5 | 13 | 0.000000211995 |
| Oryza alta | GWHAZTO00000013 | 6 | CH_oal_977 | 4 | 11 | 0.000050007 |
| Oryza sativa ssp. indica | Chr9 | 6 | CH_osaindica_356 | 4 | 7 | 0.00000305876 |
| Phyllostachys edulis | hic_scaffold_9 | 6 | CH_ped_977 | 3 | 4 | 0.000982639 |
| Sequoiadendron giganteum | chr8 | 6 | CH_sgi_317 | 8 | 11 | 7.09207e-16 |
| Selaginella moellendorffii | scaffold_69 | 6 | CH_smo_296 | 3 | 3 | 0.000382655 |
| Selaginella moellendorffii | scaffold_42 | 6 | CH_smo_72 | 6 | 15 | 0.0000000284733 |
| Spirodela polyrhiza | pseudo12 | 6 | CH_spo_210 | 4 | 11 | 0.0000853375 |
| Spirodela polyrhiza | pseudo5 | 6 | CH_spo_377 | 3 | 4 | 0.000568828 |
| Saccharum spontaneum | Chr6A | 6 | CH_ssp_1915 | 3 | 3 | 0.000540261 |
| Triticum dicoccoides | 7B | 6 | CH_tdi_1050 | 3 | 3 | 0.000285276 |
| Triticum dicoccoides | 5B | 6 | CH_tdi_170 | 6 | 6 | 0.00000000000111103 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |