Functional clusters
Information
- Type Gene Ontology
- Description sulfate transmembrane transport
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Amborella trichopoda | AmTr_v1.0_scaffold00010 | 3 | CH_atr_256 | 2 | 2 | 0.000238322 |
| Chara braunii | BFEA01000510 | 3 | CH_cbr_157 | 2 | 2 | 0.000431562 |
| Cenchrus purpureus | GWHAORA00000006 | 3 | CH_cpu_338 | 3 | 3 | 0.000000315374 |
| Lolium perenne | Lp_chr4_0 | 3 | CH_lpe_407 | 2 | 3 | 0.000578543 |
| Magnolia biondii | Chr02 | 3 | CH_mbi_673 | 2 | 2 | 0.000728491 |
| Miscanthus sinensis | Chr02 | 3 | CH_msi_167 | 3 | 3 | 0.0000000870898 |
| Oryza alta | GWHAZTO00000003 | 3 | CH_oal_113 | 4 | 6 | 0.000000000670063 |
| Oryza alta | GWHAZTO00000001 | 3 | CH_oal_172 | 4 | 12 | 0.0000000220979 |
| Oryza alta | GWHAZTO00000013 | 3 | CH_oal_237 | 3 | 3 | 0.000000341108 |
| Oryza brachyantha | 3 | 3 | CH_obr_60 | 4 | 7 | 0.0000000159908 |
| Oryza sativa ssp. indica | Chr3 | 3 | CH_osaindica_66 | 4 | 7 | 0.000000000217126 |
| Oryza sativa Kitaake | Chr3 | 3 | CH_osak_108 | 4 | 6 | 0.000000000561615 |
| Oryza sativa ssp. japonica | chr03 | 3 | CH_osa_55 | 5 | 9 | 0.0000000000147066 |
| Oropetium thomaeum | Chromosome_4 | 3 | CH_oth_220 | 2 | 2 | 0.000711845 |
| Phyllostachys edulis | hic_scaffold_15 | 3 | CH_ped_154 | 3 | 3 | 0.00000020919 |
| Panicum hallii | Chr09 | 3 | CH_pha_123 | 3 | 3 | 0.000000101309 |
| Sorghum bicolor | Chr01 | 3 | CH_sbi_155 | 3 | 4 | 0.000000413008 |
| Secale cereale | GWHASIY00000007 | 3 | CH_sce_201 | 3 | 3 | 0.0000000621882 |
| Sequoiadendron giganteum | chr2 | 3 | CH_sgi_549 | 3 | 5 | 0.0000000355966 |
| Setaria italica | scaffold_9 | 3 | CH_sit_206 | 3 | 6 | 0.00000202091 |
| Spirodela polyrhiza | pseudo20 | 3 | CH_spo_61 | 3 | 3 | 0.0000000623308 |
| Saccharum spontaneum | Chr1B | 3 | CH_ssp_261 | 3 | 3 | 0.000000310814 |
| Saccharum spontaneum | Chr1D | 3 | CH_ssp_325 | 3 | 4 | 0.00000124312 |
| Setaria viridis | Chr_09 | 3 | CH_svi_172 | 3 | 4 | 0.000000326692 |
| Triticum aestivum | Chr4B | 3 | CH_tae_580 | 3 | 3 | 0.000000238835 |
| Triticum aestivum | Chr4A | 3 | CH_tae_581 | 3 | 3 | 0.000000238835 |
| Triticum aestivum | Chr4D | 3 | CH_tae_582 | 3 | 3 | 0.000000238835 |
| Triticum dicoccoides | 4A | 3 | CH_tdi_188 | 3 | 3 | 0.000000158619 |
| Triticum dicoccoides | 4B | 3 | CH_tdi_189 | 3 | 3 | 0.000000158619 |
| Amborella trichopoda | AmTr_v1.0_scaffold00010 | 4 | CH_atr_256 | 2 | 2 | 0.000238322 |
| Chara braunii | BFEA01000510 | 4 | CH_cbr_157 | 2 | 2 | 0.000431562 |
| Cenchrus purpureus | GWHAORA00000006 | 4 | CH_cpu_338 | 3 | 3 | 0.000000315374 |
| Lolium perenne | Lp_chr4_0 | 4 | CH_lpe_407 | 2 | 3 | 0.000578543 |
| Magnolia biondii | Chr02 | 4 | CH_mbi_673 | 2 | 2 | 0.000728491 |
| Miscanthus sinensis | Chr02 | 4 | CH_msi_167 | 3 | 3 | 0.0000000870898 |
| Oryza alta | GWHAZTO00000003 | 4 | CH_oal_113 | 4 | 6 | 0.000000000670063 |
| Oryza alta | GWHAZTO00000001 | 4 | CH_oal_172 | 4 | 12 | 0.0000000220979 |
| Oryza alta | GWHAZTO00000013 | 4 | CH_oal_237 | 3 | 3 | 0.000000341108 |
| Oryza brachyantha | 3 | 4 | CH_obr_60 | 4 | 7 | 0.0000000159908 |
| Oryza sativa ssp. indica | Chr3 | 4 | CH_osaindica_66 | 4 | 7 | 0.000000000217126 |
| Oryza sativa Kitaake | Chr3 | 4 | CH_osak_108 | 4 | 6 | 0.000000000561615 |
| Oryza sativa ssp. japonica | chr03 | 4 | CH_osa_55 | 5 | 9 | 0.0000000000147066 |
| Oropetium thomaeum | Chromosome_4 | 4 | CH_oth_220 | 2 | 2 | 0.000711845 |
| Phyllostachys edulis | hic_scaffold_15 | 4 | CH_ped_154 | 3 | 3 | 0.00000020919 |
| Panicum hallii | Chr09 | 4 | CH_pha_123 | 3 | 3 | 0.000000101309 |
| Sorghum bicolor | Chr01 | 4 | CH_sbi_155 | 3 | 4 | 0.000000413008 |
| Secale cereale | GWHASIY00000007 | 4 | CH_sce_201 | 3 | 3 | 0.0000000621882 |
| Sequoiadendron giganteum | chr2 | 4 | CH_sgi_549 | 3 | 5 | 0.0000000355966 |
| Setaria italica | scaffold_9 | 4 | CH_sit_206 | 3 | 6 | 0.00000202091 |
| Spirodela polyrhiza | pseudo20 | 4 | CH_spo_61 | 3 | 3 | 0.0000000623308 |
| Saccharum spontaneum | Chr1B | 4 | CH_ssp_261 | 3 | 3 | 0.000000310814 |
| Saccharum spontaneum | Chr1D | 4 | CH_ssp_325 | 3 | 4 | 0.00000124312 |
| Setaria viridis | Chr_09 | 4 | CH_svi_172 | 3 | 4 | 0.000000326692 |
| Triticum aestivum | Chr4B | 4 | CH_tae_580 | 3 | 3 | 0.000000238835 |
| Triticum aestivum | Chr4A | 4 | CH_tae_581 | 3 | 3 | 0.000000238835 |
| Triticum aestivum | Chr4D | 4 | CH_tae_582 | 3 | 3 | 0.000000238835 |
| Triticum dicoccoides | 4A | 4 | CH_tdi_188 | 3 | 3 | 0.000000158619 |
| Triticum dicoccoides | 4B | 4 | CH_tdi_189 | 3 | 3 | 0.000000158619 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |