Functional clusters

Information

  • Type Gene Ontology
  • Description developmental process

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Cenchrus purpureus GWHAORA00000013 3 CH_cpu_790 15 25 0.00028377
Dioscorea dumetorum contig540 3 CH_ddu_167 17 28 0.000117753
Musa acuminata chr04 3 CH_mac_208 30 64 0.000281513
Panicum hallii Chr01 3 CH_pha_273 26 71 0.0000701993
Sorghum bicolor Chr04 3 CH_sbi_396 27 80 0.000389633
Cenchrus purpureus GWHAORA00000013 4 CH_cpu_790 15 25 0.00028377
Dioscorea dumetorum contig540 4 CH_ddu_167 17 28 0.000117753
Musa acuminata chr04 4 CH_mac_208 30 64 0.000281513
Panicum hallii Chr01 4 CH_pha_273 26 71 0.0000701993
Sorghum bicolor Chr04 4 CH_sbi_396 27 80 0.000389633

Available child term results

Ontology identifier Description Number of clusters
GO:0000578 embryonic axis specification 2
GO:0000769 syncytium formation by mitosis without cytokinesis 8
GO:0000902 cell morphogenesis 2
GO:0001709 cell fate determination 4
GO:0003006 developmental process involved in reproduction 4
GO:0006949 syncytium formation 2
GO:0007275 multicellular organism development 12
GO:0007389 pattern specification process 4
GO:0008360 regulation of cell shape 2
GO:0009555 pollen development 20
GO:0009557 antipodal cell differentiation 4
GO:0009561 megagametogenesis 2
GO:0009653 anatomical structure morphogenesis 2
GO:0009791 post-embryonic development 12
GO:0009793 embryo development ending in seed dormancy 12
GO:0009798 axis specification 4
GO:0009826 unidimensional cell growth 4
GO:0009830 cell wall modification involved in abscission 26
GO:0009835 fruit ripening 2
GO:0009838 abscission 2
GO:0009845 seed germination 6
GO:0009860 pollen tube growth 2
GO:0009901 anther dehiscence 2
GO:0009908 flower development 8
GO:0009909 regulation of flower development 8
GO:0009910 negative regulation of flower development 20
GO:0009911 positive regulation of flower development 8
GO:0009934 regulation of meristem structural organization 2
GO:0009944 polarity specification of adaxial/abaxial axis 2
GO:0009947 centrolateral axis specification 2
GO:0009955 adaxial/abaxial pattern specification 4
GO:0009956 radial pattern formation 6
GO:0009960 endosperm development 16
GO:0010015 root morphogenesis 2
GO:0010016 shoot system morphogenesis 2
GO:0010026 trichome differentiation 4
GO:0010029 regulation of seed germination 2
GO:0010030 positive regulation of seed germination 2
GO:0010050 vegetative phase change 4
GO:0010054 trichoblast differentiation 2
GO:0010062 negative regulation of trichoblast fate specification 2
GO:0010063 positive regulation of trichoblast fate specification 2
GO:0010064 embryonic shoot morphogenesis 2
GO:0010068 protoderm histogenesis 2
GO:0010071 root meristem specification 2
GO:0010073 meristem maintenance 2
GO:0010082 regulation of root meristem growth 2
GO:0010086 embryonic root morphogenesis 4
GO:0010088 phloem development 14
GO:0010089 xylem development 4
GO:0010090 trichome morphogenesis 8
GO:0010091 trichome branching 2
GO:0010094 specification of carpel identity 12
GO:0010097 specification of stamen identity 2
GO:0010100 negative regulation of photomorphogenesis 2
GO:0010102 lateral root morphogenesis 6
GO:0010150 leaf senescence 4
GO:0010152 pollen maturation 20
GO:0010158 abaxial cell fate specification 2
GO:0010183 pollen tube guidance 14
GO:0010187 negative regulation of seed germination 6
GO:0010197 polar nucleus fusion 4
GO:0010198 synergid death 4
GO:0010199 organ boundary specification between lateral organs and the meristem 2
GO:0010214 seed coat development 2
GO:0010227 floral organ abscission 2
GO:0010231 maintenance of seed dormancy 2
GO:0010234 anther wall tapetum cell fate specification 6
GO:0010235 guard mother cell cytokinesis 2
GO:0010254 nectary development 2
GO:0010305 leaf vascular tissue pattern formation 2
GO:0010311 lateral root formation 6
GO:0010321 regulation of vegetative phase change 2
GO:0010374 stomatal complex development 8
GO:0010434 bract formation 4
GO:0010440 stomatal lineage progression 4
GO:0010442 guard cell morphogenesis 8
GO:0010444 guard mother cell differentiation 2
GO:0010449 root meristem growth 2
GO:0010492 maintenance of shoot apical meristem identity 2
GO:0010584 pollen exine formation 8
GO:0010588 cotyledon vascular tissue pattern formation 8
GO:0010589 leaf proximal/distal pattern formation 2
GO:0010618 aerenchyma formation 4
GO:0021700 developmental maturation 6
GO:0022603 regulation of anatomical structure morphogenesis 2
GO:0022619 generative cell differentiation 6
GO:0030154 cell differentiation 2
GO:0035017 cuticle pattern formation 2
GO:0035264 multicellular organism growth 28
GO:0035265 organ growth 2
GO:0035670 plant-type ovary development 2
GO:0035987 endodermal cell differentiation 2
GO:0040014 regulation of multicellular organism growth 2
GO:0042335 cuticle development 4
GO:0045168 cell-cell signaling involved in cell fate commitment 2
GO:0045691 regulation of embryo sac central cell differentiation 2
GO:0045765 regulation of angiogenesis 6
GO:0045962 positive regulation of development, heterochronic 4
GO:0046621 negative regulation of organ growth 18
GO:0046622 positive regulation of organ growth 6
GO:0048229 gametophyte development 2
GO:0048235 pollen sperm cell differentiation 4
GO:0048236 plant-type sporogenesis 2
GO:0048240 sperm capacitation 20
GO:0048263 determination of dorsal identity 4
GO:0048314 embryo sac morphogenesis 2
GO:0048316 seed development 2
GO:0048317 seed morphogenesis 12
GO:0048354 mucilage biosynthetic process involved in seed coat development 2
GO:0048359 mucilage metabolic process involved in seed coat development 2
GO:0048364 root development 4
GO:0048440 carpel development 2
GO:0048444 floral organ morphogenesis 2
GO:0048451 petal formation 4
GO:0048455 stamen formation 2
GO:0048457 floral whorl morphogenesis 2
GO:0048459 floral whorl structural organization 2
GO:0048461 flower structural organization 12
GO:0048462 carpel formation 2
GO:0048469 cell maturation 2
GO:0048481 plant ovule development 2
GO:0048482 plant ovule morphogenesis 2
GO:0048497 maintenance of floral organ identity 2
GO:0048505 regulation of timing of cell differentiation 2
GO:0048507 meristem development 8
GO:0048510 regulation of timing of transition from vegetative to reproductive phase 6
GO:0048527 lateral root development 2
GO:0048528 post-embryonic root development 2
GO:0048532 anatomical structure arrangement 2
GO:0048573 photoperiodism, flowering 2
GO:0048574 long-day photoperiodism, flowering 2
GO:0048575 short-day photoperiodism, flowering 2
GO:0048576 positive regulation of short-day photoperiodism, flowering 2
GO:0048577 negative regulation of short-day photoperiodism, flowering 4
GO:0048586 regulation of long-day photoperiodism, flowering 2
GO:0048587 regulation of short-day photoperiodism, flowering 10
GO:0048608 reproductive structure development 2
GO:0048629 trichome patterning 12
GO:0048646 anatomical structure formation involved in morphogenesis 2
GO:0048653 anther development 2
GO:0048654 anther morphogenesis 22
GO:0048658 anther wall tapetum development 2
GO:0048700 acquisition of desiccation tolerance in seed 44
GO:0048731 system development 4
GO:0048766 root hair initiation 6
GO:0048767 root hair elongation 32
GO:0048825 cotyledon development 4
GO:0048829 root cap development 4
GO:0048831 regulation of shoot system development 2
GO:0048856 anatomical structure development 2
GO:0048863 stem cell differentiation 2
GO:0048867 stem cell fate determination 6
GO:0048868 pollen tube development 6
GO:0051093 negative regulation of developmental process 2
GO:0051094 positive regulation of developmental process 2
GO:0051511 negative regulation of unidimensional cell growth 6
GO:0051513 regulation of monopolar cell growth 8
GO:0055046 microgametogenesis 2
GO:0060560 developmental growth involved in morphogenesis 2
GO:0060773 flower phyllotactic patterning 4
GO:0060862 negative regulation of floral organ abscission 16
GO:0061062 regulation of nematode larval development 2
GO:0062210 shoot regeneration 4
GO:0062211 root regeneration 2
GO:0070584 mitochondrion morphogenesis 2
GO:0080022 primary root development 4
GO:0080060 integument development 2
GO:0080086 stamen filament development 24
GO:0080092 regulation of pollen tube growth 6
GO:0080110 sporopollenin biosynthetic process 4
GO:0080112 seed growth 4
GO:0080113 regulation of seed growth 4
GO:0080127 fruit septum development 6
GO:0080147 root hair cell development 2
GO:0080159 zygote elongation 2
GO:0080166 stomium development 2
GO:0080172 petal epidermis patterning 2
GO:0080181 lateral root branching 4
GO:0090057 root radial pattern formation 52
GO:0090059 protoxylem development 12
GO:0090213 regulation of radial pattern formation 4
GO:0090342 regulation of cell aging 2
GO:0090344 negative regulation of cell aging 4
GO:0090470 shoot organ boundary specification 4
GO:0090506 axillary shoot meristem initiation 4
GO:0090567 reproductive shoot system development 2
GO:0090626 plant epidermis morphogenesis 2
GO:0090696 post-embryonic plant organ development 2
GO:0090698 post-embryonic plant morphogenesis 2
GO:0090701 specification of plant organ identity 2
GO:0090708 specification of plant organ axis polarity 4
GO:0090709 regulation of timing of plant organ formation 8
GO:0098755 maintenance of seed dormancy by absisic acid 4
GO:0120195 positive regulation of anther dehiscence 2
GO:0140547 acquisition of seed longevity 4
GO:1900032 regulation of trichome patterning 4
GO:1900033 negative regulation of trichome patterning 4
GO:1900055 regulation of leaf senescence 2
GO:1900057 positive regulation of leaf senescence 12
GO:1900140 regulation of seedling development 4
GO:1901332 negative regulation of lateral root development 2
GO:1901333 positive regulation of lateral root development 2
GO:1901371 regulation of leaf morphogenesis 18
GO:1902182 shoot apical meristem development 2
GO:1902184 negative regulation of shoot apical meristem development 4
GO:1902185 positive regulation of shoot apical meristem development 2
GO:1902459 positive regulation of stem cell population maintenance 2
GO:1902890 regulation of root hair elongation 2
GO:1902892 positive regulation of root hair elongation 2
GO:1903224 regulation of endodermal cell differentiation 2
GO:1903866 palisade mesophyll development 4
GO:1905177 tracheary element differentiation 2
GO:1905499 trichome papilla formation 2
GO:1905614 negative regulation of developmental vegetative growth 2
GO:1905933 regulation of cell fate determination 2
GO:1990058 fruit replum development 2
GO:1990059 fruit valve development 2
GO:1990064 ground tissue pattern formation 24
GO:2000014 regulation of endosperm development 2
GO:2000025 regulation of leaf formation 2
GO:2000028 regulation of photoperiodism, flowering 4
GO:2000032 regulation of secondary shoot formation 4
GO:2000033 regulation of seed dormancy process 22
GO:2000034 regulation of seed maturation 2
GO:2000122 negative regulation of stomatal complex development 24
GO:2000123 positive regulation of stomatal complex development 6
GO:2000306 positive regulation of photomorphogenesis 4
GO:2000692 negative regulation of seed maturation 2

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001